Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01104 ATGGAGCTCAATGATTCTATCGGAGAGCTCAGAGACCTGAACGAGTTAGGAGCAACTCGTTCGGGGCTTGGGATTGACCTCAATGAGATCCCTTCCCCTTCGTTCATCGAAACCCTACCGGATTCTATTGACATCGTACGGACTTACCATGAGAATCCCCCACCTCCTCCTGGAGGTCCGGCTGGCATTCCTGGAGAGGGCAGGGCTGCAGCTTGTGCTGTGTGTGCTAAGCCGGAGGTGAGAGGTCACGTGCTTGTTTGTGATGGATGTGAGCGTGGGTATCATTTGAGCTGCGTGGGAATGCGCTGCCGTCAACCGCTTTGCCTCGATGAATGGCTCTGTGGGGAGTGCTTGTCAAATGGTGTCAAGAGTAAACGGTGGCCTTTGGGTGTGAAGTCCAAACAGATTTTGGATATCAATGCTTCCCCACCCAGTGATTGGGATGGCGATGTAAACGAGGACTTGTGGGAATTGAGAAAGCACACTCTGGATGGTAATTCTTTTGGTGCCAATCCATTTGGTGCCCCAGTGACTTGTTCAAAGTTCTCCAATGGCTATGTGACACATGCTGTCAAACTTGGTTTTGAGGACATACTAAATCGTACCTCCACAGAGGGTAGAAGTCTTGAAGAAGCCGATATTAATTTTTCAATGGGAAAGCATAGGAGTAGTAATAATACAGCTGTTAGATGTCCACATCGGACTACAAGTGAGATATTTTTGCAGGCTCTTAAAGAATTTGTGGCTGATCGGAATGGTGTGTTGGAGGAAGGTTGGCATGTAGATGTAAGACAATCTCTGGATAGTTCTGATGTATATGCAGTATACTGTGCTCCTGATGGGAAGTTGTTTGATTCTGTGTTTGAAGTTGCTAGTTATCTTGGGTTGATGTCGAACAACAATTATGCTGAGCCTGCTGTGAGAAATGAGAGATCTATTTTGAAAATGGAAGGGTCACATATTTCCAGAAAAAGAAAATCCGCAAGGTTTGCAGTTCCAAATGGTTCTGTTGAAAGTAACGATGCCTTGGTCAGTGGTTATTGTAAGGAATCTTCTGCTAATGGTGGAAGAATGGAGTGCCCAAATGCAGGTGAAAGTACATCTAAAGTTTCTGAAACAGGGCTAAACGACGGGGACACCTCTGGGTATCAGCAAGTGGAAGATGGATTTCCTCTGCAGTTTGCAGATTTCTTTGTGATTTCTATGGGAAAGATTGATGCTAGACATTCATATAATGATGTTGACATCATCTGGCCAGTAGGTTACAAATCGTGTTGGCACGATAAGATTACAGGTTCCATTTTTACATGTGAAGTTTTTGATGGTGGTGTTTCTGGACCTTTATTTAAAGTCAAAAGACGTTCCTGCTGTGAAACACCTCTACCTGTTGGGTCAACCATCCTGTCTTTGGCTAAGCCTACAGAATTAGTTCGTCAAACTAATGGAGAAGATCAATTAAGATCTCACAATGAATGGGATGGTGATAGCACAATCCAAACGATTCTTTCAGATCTCTGTCTGCCTGTGGACAATGATATTTTCAGCTGTCTGACAAGTCCTTCTAATAAGGCTTCTGATTCACAGCCACAGGAATTGTTGCAACCTGCTCCCACCATGGTTCAAAACAAAGCTGAAATTTTTATGCATAATGGAAGGGAACAAACTGATGAAATTGGTGAGATTTCAGCTGAAGAGTGCTCATCATCGCTGGCATGGAAATCGTTATCCAAAAAAATTGTTGATGTCTGCACAGAAATCTATAAACAGAAAGGGACTCTGAAGTTCTTCTGCAAACATGTTGAAAGCGAAAAATGCCAGTTAAAATGTGATATAGAAAATGCAAACAGTAGCAGCAATTCTCTTTCAGCTTCATTTGCCAAATTTTATGGTTCACCTGGTTTTACACGCATCCCTTCCATTGTCCAGTTGGACTATGAATTAGATGCCACAGTAGAGGCCATTTCAAAATGGTTGGATCAGGATAGATTTGGATTAGATATGGCATTTGTCCAAGAAATATTAGAACGGCAGCTGGGTGCCCAAGACCATTGCAGGTATCAATTGCTTAATACCAGAAGTGACTACTCGGCATCATGGACTGTCAGTAATGGGTTTCTTGTGATGGAAACGACTGGTCAATTGCAATATAACGAAGAGGGAGCATCAAATGGATTATATGGTGCATTGAAGAGGGCAAGGTTGGCTGAGGAACCTAACATAAGTGATCGTTGTCCTCCTCAGGGGAAGCCAGTGTGCTCCAGAGTTCCTTCTGAGCTTGTTGGTGATGTTTTTCAGGCATGGGAGCTGTTATGCCGGTTCCAGGAAACTTTGGATCTTAAGGAGTCAGTTTCCTTGTATGATTTAGAAGAGGAGCTTATGAGCCCTTGGTTTGATGGCGTGAAATCTCGGGGGAAGTTTGAGATAGAAACCCAAGGGCACCAAGATTCAAGTTTGCAAGGAGTTGATAGTGGTGAAGAAACGATCTTGTCAGTGAGCTCTAAATCTGACTCTAAGATTTCACAGGGAAACCCCCATGCATTTATTCCAATGGAAACAGAAGCCATGAAAGAGGAAGCTCAAGTAAAACTGGCATCTTCTACTTACAGCAGATGCTATGGTTTAGCTTTGACAAAGACTCATATTGCACTGTTGGGGGTGCTAATCAGTGAGTTGCAGACCAAGGTTGCTGCCCTGGTAGATCCCAACTTTGAACCCGGAGAATCAAGACCAAAGCGAGGAAGGAAGAAAGATATTGATCCTACAATATCTTCCAAACGAAGCAAGCTCAATATGCTACCTGTTAATGAACTGACTTGGCCTGAATTAGCTCGAAGATATGTGTTAGCTGTACTGTCCATGGATGGAAACCTCGACTCAGCAGAGATTACTGCTCGAGAAAGTGGTAAAGTATTTCGTTGCCTACAAGGGGATGGTGGATTGCTTTGTGGCTCTCTTACTGGAATAGCTGGAATGGAAGCAGATGCACTGTTAACTTAA 2997 0.4361 MELNDSIGELRDLNELGATRSGLGIDLNEIPSPSFIETLPDSIDIVRTYHENPPPPPGGPAGIPGEGRAAACAVCAKPEVRGHVLVCDGCERGYHLSCVGMRCRQPLCLDEWLCGECLSNGVKSKRWPLGVKSKQILDINASPPSDWDGDVNEDLWELRKHTLDGNSFGANPFGAPVTCSKFSNGYVTHAVKLGFEDILNRTSTEGRSLEEADINFSMGKHRSSNNTAVRCPHRTTSEIFLQALKEFVADRNGVLEEGWHVDVRQSLDSSDVYAVYCAPDGKLFDSVFEVASYLGLMSNNNYAEPAVRNERSILKMEGSHISRKRKSARFAVPNGSVESNDALVSGYCKESSANGGRMECPNAGESTSKVSETGLNDGDTSGYQQVEDGFPLQFADFFVISMGKIDARHSYNDVDIIWPVGYKSCWHDKITGSIFTCEVFDGGVSGPLFKVKRRSCCETPLPVGSTILSLAKPTELVRQTNGEDQLRSHNEWDGDSTIQTILSDLCLPVDNDIFSCLTSPSNKASDSQPQELLQPAPTMVQNKAEIFMHNGREQTDEIGEISAEECSSSLAWKSLSKKIVDVCTEIYKQKGTLKFFCKHVESEKCQLKCDIENANSSSNSLSASFAKFYGSPGFTRIPSIVQLDYELDATVEAISKWLDQDRFGLDMAFVQEILERQLGAQDHCRYQLLNTRSDYSASWTVSNGFLVMETTGQLQYNEEGASNGLYGALKRARLAEEPNISDRCPPQGKPVCSRVPSELVGDVFQAWELLCRFQETLDLKESVSLYDLEEELMSPWFDGVKSRGKFEIETQGHQDSSLQGVDSGEETILSVSSKSDSKISQGNPHAFIPMETEAMKEEAQVKLASSTYSRCYGLALTKTHIALLGVLISELQTKVAALVDPNFEPGESRPKRGRKKDIDPTISSKRSKLNMLPVNELTWPELARRYVLAVLSMDGNLDSAEITARESGKVFRCLQGDGGLLCGSLTGIAGMEADALLT* 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01104 998 ProSiteProfiles FYR domain FYRN motif profile. 389 442 IPR003888 GO:0005634
Pte18g01104 998 SMART PHD_3 71 118 IPR001965 -
Pte18g01104 998 Pfam Methyl-CpG binding domain 247 299 IPR001739 GO:0003677
Pte18g01104 998 CDD PHD_SF 72 117 - -
Pte18g01104 998 ProSitePatterns Zinc finger PHD-type signature. 72 117 IPR019786 -
Pte18g01104 998 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 139 IPR013083 -
Pte18g01104 998 PANTHER OS02G0192300 PROTEIN 14 997 - -
Pte18g01104 998 SUPERFAMILY FYVE/PHD zinc finger 70 129 IPR011011 -
Pte18g01104 998 Gene3D - 390 494 - -
Pte18g01104 998 ProSiteProfiles Zinc finger PHD-type profile. 69 120 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01104 Pte-Chr18 23463240 23468435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01104 4 997 C2H2 Transcription Factor Family AT3G01460 42.255 0.0 734