Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01099 ATGTCTCGGAATCGATATCAAATCCAGTTGAAAAATGGTAATGTGAACTATCCACCGCCTCTTCCTCCTACTCCTTCAGATGCATTTTATGGTGGTTTACATAGAGAATCTCCACATCCTTCATCTTCTAGTGTTAGAATTAGTCCTGCTGTTCTTTTCATCATAGTGATTTTAGCTGTGCTGTTTTTCATTTCTGGCCTGCTTCATCTCCTTGTAAGATTTCTGGTGAGGCACCCATCTTCAGCATCTTCTCAATCTAATAGGTACCCAGAAGTTTCTACCTCAGATGCTCTTCAGAGACAGCTACAACAGCTATTTCATCTCCATGACTCTGGATTAGATCAATCTTTCATTGATGCACTTCCTGTTTTCCAGTATAGAGAGATAGTGGGGCTGAAAGAGCCATTTGATTGTGCTGTCTGTCTCTGCGAGTTTTCTCAGAAGGACAAGCTCAGATTGCTTCCTATGTGCAGCCATGCTTTTCATATTAATTGTATAGACACTTGGCTCTTATCAAATTCCACATGCCCTCTTTGTAGAGGCACCCTTTTCACGCCCGAATTTTCAGTTGAGAACCCAATATTTGAGTTTGATGATTCTAGAGAAGAAGATGGATGTCCTGTTAATGTAGAAAGCAGATGTCCTCCTAGACCAAAAACTATGGAGATTGAAGAGATTGTTGTTGAAAAGGGGATTTTACCAGTGAGACTTGGTAAATTTAGAAGGTTAAATGAGGATAAGGGGGATACCGAAGGAGGAGGAGAGACTAGTAGCAGTAACTTAGATGCAAGGAGGTGTTTCTCGATGGGATCTTATCAATATGTCCTTGGCAATTCAGACCTAAGAGTTGCCTTAAGCCATGATAGGAAGGGTTGTGATAATAAGCCTACTGATGGGACAGAGCAAACAGATAAAGCCTCAATCTCAACTGATATGGAAGCGAAGAAGATTAGCAGTGTAACTAAAGGTGATAGCTATTCTGTGTCCAAAATCTGGTTGTGGTCAAAGAAGGGTAAATTTTCAAGTTCTTCAGATGCTCATGTGGGCATACCATCTTCTCTCGCAAAAGAACTGCCTTGGTTGAAGAAAACACAAGGGTCATGA 1104 0.4103 MSRNRYQIQLKNGNVNYPPPLPPTPSDAFYGGLHRESPHPSSSSVRISPAVLFIIVILAVLFFISGLLHLLVRFLVRHPSSASSQSNRYPEVSTSDALQRQLQQLFHLHDSGLDQSFIDALPVFQYREIVGLKEPFDCAVCLCEFSQKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRGTLFTPEFSVENPIFEFDDSREEDGCPVNVESRCPPRPKTMEIEEIVVEKGILPVRLGKFRRLNEDKGDTEGGGETSSSNLDARRCFSMGSYQYVLGNSDLRVALSHDRKGCDNKPTDGTEQTDKASISTDMEAKKISSVTKGDSYSVSKIWLWSKKGKFSSSSDAHVGIPSSLAKELPWLKKTQGS* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01099 367 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 42 332 - -
Pte18g01099 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 185 IPR013083 -
Pte18g01099 367 MobiDBLite consensus disorder prediction 289 311 - -
Pte18g01099 367 CDD RING-H2_EL5-like 137 180 - -
Pte18g01099 367 FunFam RING-H2 finger protein ATL46 100 185 - -
Pte18g01099 367 Pfam Ring finger domain 137 180 IPR001841 -
Pte18g01099 367 SMART ring_2 138 179 IPR001841 -
Pte18g01099 367 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Pte18g01099 367 SUPERFAMILY RING/U-box 117 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01099 Pte-Chr18 23390986 23393230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01099 66 344 C3H Transcription Factor Family AT2G18650 43.175 2.89e-62 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01099 - - tcc:18600728 518.85