Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01089 ATGAAATCTCAAGAGGGTCTCAAGTTCATTGGGCAAAATCCCAAGTGGGGTTTTGGTAAAGAAGTATCAGCAACAGAGTATTGGACAGAAGCTGTAGCTCCTAGGCGCAAATGGAAGATTTTCAATAGGTCATCTTCAGCTCTACCTTTCAACCCTCAAACTAAGCCAAAGGCACCACCAAAGGAGTTTCTTTGTCCCTTGTCTGGGTCTATCATGGCTGACCCTGTGATTGTCTCATCAGGTCATACCTTTGAGAAAAACTCTGTTCAAGCCTGCAAAAACTTAGGTTTCGCGCCGACAATCAACGGAGGCTACACACCTGATTTGTCTACCTTAATCCCCAACCTTGCTCTCAAATCTGCCATAGTCAATTGGTGCAAGGCCTCTTCCATTGACCCGCCCAACCCTCCGGATTCCAATTCTGCTGAGAAACTCGTCCGTACGCTTATGACTCAGAAGAGTCAGAATGCCAACCAAAATGGAGGTGAACCGCAGACGGGACTAAGCTTTGGATCTGAAAGGCAACTTATTGAAGCTGCTAAGGAAAACCCACCTGTGAATTTCACTCACGCAGCCACAGAAGTAACCCCTCGAAGGAATCATTCCTATACTAGCTCAGAAGAATCAGTAGGTACCTCTGTTTCGACGCCTCCTCTGCAACTATCAACTAGACCCAGTTGCTATTCTTCTCCATCATCCTCTGAGATTGAGACGATGGATTCTATGTCACCTGAACAAGAAGAAATCTTGTCGAAACTGAAAAGCCCACAGGTGTTTGAGGTCGAAGAAGCTGTGGTTTCACTGAGAAAGCTTACAAAGACTAGAGAGGAAACTAGAGCTCAACTCTGTACGCCTAGGTTACTCTCAGCCCTACGTCCTCTGATCCGTTCCAAGTATACAGCCATTCAGGTGAACTCAGTCGCAGCTCTGGTGAATCTATCATTGGATAAGGTGAACAAGAACAAAATCGTACGGTCAGGAGTGGTTCCTCCATTGATTTATGTGTTGAGAGATGGATACCCTCAGTCACAGGAACACGCTTGTGGTGCACTTTTCAGCTTAGCCCTTGACGATGACAGCAAGACCGCAATTGGGGTATTGGGAGCTTTGCCGCCGTTGATTCATTTGCTACGATCCGATTGTGAGCGGACTCGGCATGACTCGGCACTCGCCCTATATCATCTTTCCCTGGTTCAAAGCAACCAGACCAAGTTGACCAAACTCGGATCGGTTCCTCTTCTAATGGACATGGTGAAGTCGTATCACATGACGGGTCGGATTCTGCTCATTTTGGGCAACTTAGCTGCGGGTGTGGAGGGACGTTCTGCATTGTTGGATGCGGGTGCAGTGGAGCACTTGGTCCGGTTATTAGACGAGAAAGAGCCCGTGTCTGGGTCAACCCGTGAGAGCTGTGTTGCAGTGTTGTATGCACTGAGTCGTGGTGGATTGAGATTCAAGGCACTGGCCATGGCGGCCAGAGCGGTGAAGGTGTTGAGGAAGGTTGAGAAAGTAGGAAGTGAAAGATCAAGTGAGAAGGTGAGAGGGATATTGGAGGTGATGAAAGCCAGAGATGAAGAGGAAGCAGAAATCGACTGGGAGGAAATTCTTGACTTGGGATTCAGGAGTCATACTCGGGATGAGTCTCGTGCTCACTCGTCCGAGTTTTGA 1668 0.4808 MKSQEGLKFIGQNPKWGFGKEVSATEYWTEAVAPRRKWKIFNRSSSALPFNPQTKPKAPPKEFLCPLSGSIMADPVIVSSGHTFEKNSVQACKNLGFAPTINGGYTPDLSTLIPNLALKSAIVNWCKASSIDPPNPPDSNSAEKLVRTLMTQKSQNANQNGGEPQTGLSFGSERQLIEAAKENPPVNFTHAATEVTPRRNHSYTSSEESVGTSVSTPPLQLSTRPSCYSSPSSSEIETMDSMSPEQEEILSKLKSPQVFEVEEAVVSLRKLTKTREETRAQLCTPRLLSALRPLIRSKYTAIQVNSVAALVNLSLDKVNKNKIVRSGVVPPLIYVLRDGYPQSQEHACGALFSLALDDDSKTAIGVLGALPPLIHLLRSDCERTRHDSALALYHLSLVQSNQTKLTKLGSVPLLMDMVKSYHMTGRILLILGNLAAGVEGRSALLDAGAVEHLVRLLDEKEPVSGSTRESCVAVLYALSRGGLRFKALAMAARAVKVLRKVEKVGSERSSEKVRGILEVMKARDEEEAEIDWEEILDLGFRSHTRDESRAHSSEF* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01089 555 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 368 410 IPR000225 GO:0005515
Pte18g01089 555 SMART Ubox_2 62 125 IPR003613 GO:0004842|GO:0016567
Pte18g01089 555 ProSiteProfiles U-box domain profile. 58 132 IPR003613 GO:0004842|GO:0016567
Pte18g01089 555 SUPERFAMILY ARM repeat 247 502 IPR016024 -
Pte18g01089 555 SMART arm_5 398 436 IPR000225 GO:0005515
Pte18g01089 555 SMART arm_5 437 480 IPR000225 GO:0005515
Pte18g01089 555 SMART arm_5 316 356 IPR000225 GO:0005515
Pte18g01089 555 SMART arm_5 357 397 IPR000225 GO:0005515
Pte18g01089 555 SMART arm_5 275 315 IPR000225 GO:0005515
Pte18g01089 555 MobiDBLite consensus disorder prediction 196 239 - -
Pte18g01089 555 Gene3D - 240 519 IPR011989 -
Pte18g01089 555 SUPERFAMILY RING/U-box 56 135 - -
Pte18g01089 555 PANTHER U BOX DOMAIN-CONTAINING 47 523 - -
Pte18g01089 555 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 131 IPR013083 -
Pte18g01089 555 Pfam U-box domain 60 129 IPR003613 GO:0004842|GO:0016567
Pte18g01089 555 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 286 328 IPR000225 GO:0005515
Pte18g01089 555 Pfam Armadillo/beta-catenin-like repeat 318 355 IPR000225 GO:0005515
Pte18g01089 555 Pfam Armadillo/beta-catenin-like repeat 358 396 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01089 Pte-Chr18 23291444 23293754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01089 30 556 U-box Gene Family AT5G40140 51.756 3.01e-172 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01089 - - qsa:O6P43_004571 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01089 18 23291444 23293754 Pte18g01089 18 23291444 23293754 RCT