Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01081 ATGTTTCAGGATCAAACAGGAAAATATGATATGTTCCTTGAGGTTATGAAAGATTTCAAGGCTGAGAGGACTGATACTGCAGGAGTTATAGCAAGAGTAAAGGAACTGTTTAAAGGGCATAACAAGTTAATTCTTGGATTTAACACTTTCTTGCCAAAGGGATATGAGATAACTCTTGATGAAGATGAGACTCCTCCAAAAAAGACAGTGGAATTTAAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAGACGATTCCAAAAAGATGAACATGTATATAAATCATTTCTAGACATTTTGAACTTGTACCGCAAGGAGTACAAGGATATAAGTGAAGTTTATAGTGAGGTGGCTGTCCTTTTTGAGGACCATCCAGATTTGCTTGAGGAGTTTGCTAGGTTTCTTCCAGATACTTCTGCAGCTCCGTCTATGCAAAATATTTCTCACATTAGGCATCCAATTCAGCGTTTTAACGATAGGAGCTCTACTACGCCTACGGCACAGCAGATGCATATTGACAAGCAATGCACTTTACGGGATAGGCTTTCAGATCATGATCTTGTTACGGACCGTCCTGAATTGGATGATAAGACAAAGATGAAGGTGCAGAAGAGGCGTGCTGGAAAGGAAAGTAGAGCTGGGAGACATCATGATCAGGTTGATACAGATCGTGATAATGACAAAAATGGAGGCTATACTTCGCCACATTTCCCTAAAAAGGAGTCTATCATGAAATCTGAGGATTTTGGGAAAGATGCTAATGTAGTGTCCTATGATGACGAAGAAACCTCGAAGAGTATGAACAGCCACGCGTTCAGTTTTTTTGAGAAAGTGAAAGAAAGGTTGGGAAGTACAGATGATTACGAGGCTTTGTTGAAGTGTCTTCATATATTTAACAAGGGCATAATTAAAAGGAGCGACTTGCAAAATTTGGTTAATGAACTGCTCGGGAAGTACCCTGACATTATGGAGGAATTAAATGCTTTCCTGCAACGTTGTGAAAATAACGATGGATTCCTTGCAGGTGTCATGAGTAAAAAATCTTTGAGTACGCATGGCAATTCATCCAGATTGGTGAAGCTGGAGGACAAAAAGCAGAAGCGTGAAACAAATGAGAAGGAAAGATGTAGGGAGAAATATATGGCCAAATCTATTCATGAGCTTGACCTTAGTAGCTGCAAGCGCTGTACTCCTAGTTATCGACTTCTACCTGATGACTATCCAATTCCCTCTGCCACTCAGAGATCTGAGTTAGGGGCTCAGGTTTTGAATGATCAATGGGTAGCTGTTACTTCGGGAAGTGAGGATTGTTCTTTTAAACATATGCGAAGGAATCCGTATGAGGAGAGTCTGTTCCTATGTGAAGAGGACAGATTTGAGCTGGACATGTTGATAGAGTCTGCAAGCTCAGCTGATAAGCGCTTAGAGGAATTGTTGAATAGCATCAAGGAGAATAAGGGCAACATCAATGCTGCTTTTCATATTGAAGATCACTTAACAGCAATGAATTTAAGATGCATTGAGCGCCTATATGGTGACAATGGTCTTGATGTTATTGATATATTACATAGAGATCCTGCAGTTGCTTTGCCTGTGATATCGAAACGCCTGAAGCAGAAACAAGAGGAGTGGACCAACTGTCGTGCAGATTTCAATAAGCTTTGGGCTGAAATATATGCTAAAAACCACTACAAATCTCTTGATCACCGTAGCTTCTATTTCAAGCAGCAAGATTCAAAGAACTTGAGTACCAAATCTTTTGTGACTGAAATAAAAGAAATTAAAGAAAAGCTGCAGAAGGAGGATGACATTGTTCAGGCTTTTGCTTCTGGAAAAATTATTCGCGTTGCGCACATGAAATTTGAATATTCCAACATTGAGCTACATCAAGACTTGCAAAAACTTATCATGTATTCATGCCGAGAGCTCTGCTCCACAAAAGACCAATTTAGTAAAGTTGTGAGACTATGGACCACATTTGTGGAACCATGGTTGGGTGTTCCTCCACAGCCTTATCATGGAACAGAAGTTAGAGAAGACAAAAAAGCAAACCATTCCATGCGGGCATCAAGCATGGAGAAGGGGAATGGAATTCCAGTTGTCGACACTAGTCAAACTACCATGGTTTTTTTGAAGCACAAAAAGTCAGCTAGTAATGAAATTGAAAATAGAACCATTGAAGCAGTTTCTCATACCAATTCGGCAAACAGTGATAAAGAAAATGGTTCTCCTTGCAGTGATCAAATTGGTAATGGTAAGATCTCTAGTAATTTCCTTGCTCAGAAGGAGCAAAGCAATATGAATAGTGATCACCATGATCAAGTAGCCAATTGTAATGGGTCATTTGCAATTAATGTTGAAAAGGATCACATCAGAACAAGCTTGGAAATGTCAGCGGGCTGTAGCTCCCAACCTAGTGGTGCTGTTGGCGAGGAAACTCATGTACCCAAGGGTCATGGTGATGCTATCCTTTCATCTGAGGTTCATGATGTGGTAAAAACAGCTCCAATGGGAAATAGGGTCTTTACTGAAACCAGTAAAGTCAGCAAAAACCGTAAAGAATCTTCTGGGCCCTGCACAATTGAGAAGGAGGAGGGCGAGTTATCACCAAATGGTGATTTTGCGGAGGATAACTTTGTCAGATATGGAGATTCTGAAGTGGCAATGGCCAAGTCAAGACAGAGCATCGAAAGAAAGCAATTTGAATCTCAGCATGTGGGAGAGGATTGCTATCAGGTTGCTGGAAGAGATAATGATGCAGATGATGAGGAGGACAGTGGACATCTTTCAGCAGCTGGTGAAGATCTCTCAGGTAGTGAGTCTGCCGGTGTTGAGTGCTCAAGGGAGGAACATGAGGAGGAAGATATAGAACGACATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAGGCTGAGGGGATATCTGATTCGCATATTGCTGCTGGAAATGGCCAGTTTTTGCCTTTCTCAGAACAGTCCCTTTTATCTGTAAAGCCTCTTGTGAAGCATGTACCACCATCAGCTTGTGATAAGGAATGGAAAAGCTCTCAGATCTTCTATGGAAATGATGATTTCTTTGTGCTTTTCAGGCTTCATCAAATGCTTTATGAAAGAATCTTGTCAGCAAAAGCCAATTCACTTTGTTCTGATATGAAATTAAAAAGGACAAAGGATGGCAATGCTCTAGACCCCTATTCCAGATTCATGAGTGCATTGTACAATTTGCTTGATGGATCTGCTGACAGTACTAAATTCGAAGATGAATGCCAATCAACAATTGGGAAACAGTCATATGTTTTATTTACATTGGGCAAGCTAATATTTAAATTGGTGAAACAGCTCCAAACTCTTTCGTCTGATGATATTGACAACAAGCTTCTTCAATTGTACGATTATGAGAAGTCACGAAAACCTGGGACATTAGTTGATTCAGTATATTATGCTAATGCATGTGCCATCCTTCACGAGGAGAATATATATCGGTTTGAATGTCAGTCCAATGATCCATGCCAACTCTCTATCCAGCTGATGGACCGCCTGAATGAAAATTCAGAGGTATTTGCTATTTCTATGGATCCTTGTTTTGCCAATTACATGTACAGCGAGTTTTTGTCAGTATTTCCTGACAAAGAAGAGAGCCGTGGCATTGTACTGCAAAGGTACAAATTCTGTCGGCTAAACTCAAGATTCCTGCGTTCTTCTATTTATGGGTGTTTTTGGAGTAAATTGCTTGATAAATGGATAAATGGGTATTCTTTTAAGTACATTTTTGAGCAAGAAACCCGATTCTCACAATCACTATAG 3804 0.4019 MFQDQTGKYDMFLEVMKDFKAERTDTAGVIARVKELFKGHNKLILGFNTFLPKGYEITLDEDETPPKKTVEFKEAISFVNKIKRRFQKDEHVYKSFLDILNLYRKEYKDISEVYSEVAVLFEDHPDLLEEFARFLPDTSAAPSMQNISHIRHPIQRFNDRSSTTPTAQQMHIDKQCTLRDRLSDHDLVTDRPELDDKTKMKVQKRRAGKESRAGRHHDQVDTDRDNDKNGGYTSPHFPKKESIMKSEDFGKDANVVSYDDEETSKSMNSHAFSFFEKVKERLGSTDDYEALLKCLHIFNKGIIKRSDLQNLVNELLGKYPDIMEELNAFLQRCENNDGFLAGVMSKKSLSTHGNSSRLVKLEDKKQKRETNEKERCREKYMAKSIHELDLSSCKRCTPSYRLLPDDYPIPSATQRSELGAQVLNDQWVAVTSGSEDCSFKHMRRNPYEESLFLCEEDRFELDMLIESASSADKRLEELLNSIKENKGNINAAFHIEDHLTAMNLRCIERLYGDNGLDVIDILHRDPAVALPVISKRLKQKQEEWTNCRADFNKLWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSFVTEIKEIKEKLQKEDDIVQAFASGKIIRVAHMKFEYSNIELHQDLQKLIMYSCRELCSTKDQFSKVVRLWTTFVEPWLGVPPQPYHGTEVREDKKANHSMRASSMEKGNGIPVVDTSQTTMVFLKHKKSASNEIENRTIEAVSHTNSANSDKENGSPCSDQIGNGKISSNFLAQKEQSNMNSDHHDQVANCNGSFAINVEKDHIRTSLEMSAGCSSQPSGAVGEETHVPKGHGDAILSSEVHDVVKTAPMGNRVFTETSKVSKNRKESSGPCTIEKEEGELSPNGDFAEDNFVRYGDSEVAMAKSRQSIERKQFESQHVGEDCYQVAGRDNDADDEEDSGHLSAAGEDLSGSESAGVECSREEHEEEDIERHDVDGKAESEGEAEGISDSHIAAGNGQFLPFSEQSLLSVKPLVKHVPPSACDKEWKSSQIFYGNDDFFVLFRLHQMLYERILSAKANSLCSDMKLKRTKDGNALDPYSRFMSALYNLLDGSADSTKFEDECQSTIGKQSYVLFTLGKLIFKLVKQLQTLSSDDIDNKLLQLYDYEKSRKPGTLVDSVYYANACAILHEENIYRFECQSNDPCQLSIQLMDRLNENSEVFAISMDPCFANYMYSEFLSVFPDKEESRGIVLQRYKFCRLNSRFLRSSIYGCFWSKLLDKWINGYSFKYIFEQETRFSQSL* 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01081 1267 Pfam C-terminal domain of Sin3a protein 1019 1221 IPR031693 -
Pte18g01081 1267 FunFam Paired amphipathic helix protein SIN3 261 335 - -
Pte18g01081 1267 MobiDBLite consensus disorder prediction 212 230 - -
Pte18g01081 1267 SUPERFAMILY PAH2 domain 2 53 IPR036600 GO:0006355
Pte18g01081 1267 SUPERFAMILY PAH2 domain 265 333 IPR036600 GO:0006355
Pte18g01081 1267 MobiDBLite consensus disorder prediction 174 203 - -
Pte18g01081 1267 ProSiteProfiles PAH domain profile. 263 333 IPR003822 GO:0006355
Pte18g01081 1267 SUPERFAMILY PAH2 domain 64 137 IPR036600 GO:0006355
Pte18g01081 1267 FunFam Paired amphipathic helix SIN3-like protein 67 138 - -
Pte18g01081 1267 MobiDBLite consensus disorder prediction 357 373 - -
Pte18g01081 1267 MobiDBLite consensus disorder prediction 730 753 - -
Pte18g01081 1267 MobiDBLite consensus disorder prediction 158 245 - -
Pte18g01081 1267 MobiDBLite consensus disorder prediction 846 870 - -
Pte18g01081 1267 Gene3D Paired amphipathic helix 261 335 IPR036600 GO:0006355
Pte18g01081 1267 PANTHER SIN3B-RELATED 1 1163 IPR039774 GO:0003714
Pte18g01081 1267 SMART hdac_interact2seq4b 392 492 IPR013194 -
Pte18g01081 1267 Pfam Paired amphipathic helix repeat 8 51 IPR003822 GO:0006355
Pte18g01081 1267 Pfam Paired amphipathic helix repeat 91 135 IPR003822 GO:0006355
Pte18g01081 1267 Pfam Paired amphipathic helix repeat 286 330 IPR003822 GO:0006355
Pte18g01081 1267 Gene3D Paired amphipathic helix 67 139 IPR036600 GO:0006355
Pte18g01081 1267 MobiDBLite consensus disorder prediction 915 930 - -
Pte18g01081 1267 FunFam Paired amphipathic helix protein Sin3 1 52 - -
Pte18g01081 1267 Coils Coil 465 485 - -
Pte18g01081 1267 MobiDBLite consensus disorder prediction 158 173 - -
Pte18g01081 1267 ProSiteProfiles PAH domain profile. 68 138 IPR003822 GO:0006355
Pte18g01081 1267 Gene3D Paired amphipathic helix 1 52 IPR036600 GO:0006355
Pte18g01081 1267 MobiDBLite consensus disorder prediction 845 874 - -
Pte18g01081 1267 MobiDBLite consensus disorder prediction 944 973 - -
Pte18g01081 1267 MobiDBLite consensus disorder prediction 354 373 - -
Pte18g01081 1267 Pfam Sin3 family co-repressor 394 486 IPR013194 -
Pte18g01081 1267 ProSiteProfiles PAH domain profile. 1 54 IPR003822 GO:0006355
Pte18g01081 1267 MobiDBLite consensus disorder prediction 915 973 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01081 Pte-Chr18 23228829 23240682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01081 8 87 WRKY Transcription Factor Family AT4G12020 49.383 1.54e-14 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pte18g01081 Sin3a_C 1.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01081 K11644 - qsa:O6P43_009027 1444.87