Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01080 ATGAGTGAGGATCAGCAACTCAGTGATGGTGTGGTTAAGAAGAAAAAAGATAATGATTCTATTCGATCCATCTTCACGCATGCTGATGGTGCAGATAAATTTCTTATGGCTCTTGGTTTGTTGGGTACAATCGGTGATGGGTTTACAACTCCACTGGTGTTGTTTATCTCTGGCAGCTTAATGAACAATGTTGGCAGCTTTTCTAGTCCCTTGAATTCAAACTCTACTGAACATGACATCAATAAGAATGCAGTGAGAATGCTATATTTGGCTGCGGGGTCTTTTGTTGCTTGCTTCCTTGAGGGTTACTGTTGGACAAGAACAGGAGAGAGACAAACTGCAAGAATGAGAGCAAGGTATTTGAAAGCAGTCCTAAGACAAGATGTAGGTTACTTCGATTTGCATGTTGCTAGTACATCTGATGTGATCACCAGTGTCTCGAACGACACTGTTGTAATTCAGGATTTTCTTAGTGAAAAGCTTCCAAACTTTTTAATGAACTGGTCGATGTTCATTGGGAGCTATATAGCTGCTTTCGTAATGTTATGGAGATTGGCCATTGTGGGGTTTCCTTTTGCGCTGCTTCTTGTAATCCCTGGTTTAGTGTATGGGAGAACCTTGATGGGATTGGCTAGGAAGATCAGGGAGGAGTACAATCAAGCCGGTACAATAGTAGAGCAGGCAATCTCTTCGGTCAGAACAGTTTATGCCTTTGTCGGAGAAAACAAGACCATTGCTTCTTTTTCTGCAGCTTTACAATATTCAGTGAAGTTAGGTCTGAGACAAGGCTTAGCAAAAGGCATAGCTATTGGAAGCAATGGTATTGTGTTTGCCATTTGGTCTTTCATTGCTTTTTATGGCAGCAGATTGGTCATGTATCATGGAGTTGATGGAGGCACAGTTTTTGCAGTTGGTGCAGCAATAGCAGTTGGTGGACTAGCTTTAGGTTCTGGTTTGTCTAATTTGAAGTACTTCTCAGAAGCTACCTCAGCTGGGGAACGCATTATGGAAGTGATTAAAAGAGTTCCCAAGATTGATTCAGAAAACTTGTCTGGTGAAATTCTGGATAACGTTTCAGGGGAAGTTGAGTTTCGAAGTGTTCAGTTTGCATACCCATCAAGGCCTGATAGTATTATCCTGAATGATTTCTGCTTGAAAATCCCAGCTGGCAAGTCAATGGCTTTAGTAGGTGGCAGTGGATCAGGAAAATCTACTGTAGTGTCTCTCCTACAAAGGTTTTATGATCCACTTGCAGGAGATATACTCGTTGACGGGGTCACCATTCGTAAGCTTCAGTTAAAGTGGCTAAGGTCACAGATGGGTTTGGTGAGCCAGGAGCCAGCACTTTTTGCAACCTCCATTAAAGAGAACATACTCTTTGGTAAAGAGGATGCAACAATGGAAGAAGTCATAGAAGCTGCCACAGCCTCCAATGCTCATAATTTCATCTCACAGCTGCCTCAAGGATATGATACGCAGGTTGGTGAAAGAGGTGTACAGATGTCTGGAGGACAAAAACAAAGGATTGCAATTGCCAGGGCTATCATAAAGAAACCCCAAATACTTCTGCTAGATGAAGCCACCAGTGCATTAGACTCTGAATCCGAACGAGTTGTTCAAGAAGCGTTGGACAGAGCCGCAGTAGGTCGGACCACCATTATCATTGCTCACCGGTTGTCCACCATAAGAAATGCAGATGTCATTGCTGTTGTGCAGAATGGAAAGGTCATGGAAATGGGATCACATGATGAGCTCATTCAAAATGACAATGGTCTTTACTCCTCACTTGTTCGGCTTCAGCAGACAGACCAAAAATCAAAAGGACAAGATGATCACAAATTCACATGTCCCCCATCGTCAATATCAAACATGGACATTGTAAACAACACAAGCAGCCGTAGGCTGTCTTTGGTTAGCAGATCAAGCTCTGGAAACTCAGCAGCACCTAATCGAGTTTCATTTAATGACCAAGATTGTGCTAAAGAAGAAGAAAAACTCCCTGTGAGATCGTTGGTTGGAGATCGCATGGGGCTTCTTGTTCAAACTGTGTCTGCAGTTTTAGTCGCTTGCACCATGGGTCTTGTGATTGCATGGAGGCTTGCCTTAGTTATGATAGCTGTGCAACCTCTCGTCATTATCAGCTTCTACTGCAGGCGTGTTTTGTTAAGGAGCATGTCCCAAAAGGCCATCAAGGCTCAAGATGAGTGCTGTAAGCTTGCAGCTGAGGCTGTAACCAATCTCAGAACTGTCAGTGCCTTTTCTTCTCAAGAAAGAATACTGAAAATGTTAGAGAAGATGCAAGAAGGCCCTCGTCTCGAGACCATCAAACAATCATGGTATGCTGGCATTGGCCTTGGTTGTTCACAGAGTCTGAACTCCTTAACCTGGGCTTTAGATTTTTGGTATGGTGGAAAACTAATAGCACAGGGTTACATCTCATCAGAAGCATTGTTTCAGACATTCATGATTTTGGTGAGTACAGGTCGTGTTATTGCTGATGCAGGAAGCATGACCACAGATCTAGCCAAGGGGTCAGATGCTGTTAGCACAGTATTTGCCGTTCTGGACAGATACACTAAAATTGAGCCTGAAGACCCTGATGGTTACAAGCCTGAGAAAATAAATGGGGACGTAGAATTTAAGGATGTCCATTTTGCTTATCCCGCTAGACCAGATGTGATGATCTTCCTAGGCTTCTCAATTAAAATTGAAGCAGGAAAATCAACGGCATTAGTTGGACAGAGTGGATCAGGCAAGTCTACCATCATAGCTCTCATAGAAAGATTCTACGATCCACTCAAAGGTCTTATAATGATAGATGGACGCGACGTTAAGTCATACCACCTGAGATCACTAAGGAAACACATTGCACTTGTTAGCCAAGAGCCGACATTGTTTGCTGGCACCATAAAAGATAACATTGTATATGGGGCATCCGATAAAATCGATGAATCTGAGATTATCGAAGCTGCTAGAGCTGCTAATGCACACGATTTTATTTCAAGTTTGAGAGATGGATATGATACATTGTGCGGAGACAAAGGTGTACAACTTTCAGGTGGTCAAAAGCAACGTATTGCAATCGCTAGAGCTATATTGATGAATCCATCAGTGTTGCTGTTGGATGAGGCAACCAGTGCCTTGGACAGTCAGTCAGAGAAAATTGTACAAGATGCATTAGAGAGAGTCATGGTGGGAAGGACGAGTATAGTGGTGGCACATAGGTTGAGTACCATTCAGAATTGTGATTTGATTGCTGTGCTAGAGAAAGGGAGAGTGGTGGAGAAAGGGACACACTCTTCCTTGTTGGCTAAGGGACCGTCTGGAGCTTACTACTCTTTGGTGAATCTTCAGAGGACACCACATAATACCCACTGA 3378 0.4313 MSEDQQLSDGVVKKKKDNDSIRSIFTHADGADKFLMALGLLGTIGDGFTTPLVLFISGSLMNNVGSFSSPLNSNSTEHDINKNAVRMLYLAAGSFVACFLEGYCWTRTGERQTARMRARYLKAVLRQDVGYFDLHVASTSDVITSVSNDTVVIQDFLSEKLPNFLMNWSMFIGSYIAAFVMLWRLAIVGFPFALLLVIPGLVYGRTLMGLARKIREEYNQAGTIVEQAISSVRTVYAFVGENKTIASFSAALQYSVKLGLRQGLAKGIAIGSNGIVFAIWSFIAFYGSRLVMYHGVDGGTVFAVGAAIAVGGLALGSGLSNLKYFSEATSAGERIMEVIKRVPKIDSENLSGEILDNVSGEVEFRSVQFAYPSRPDSIILNDFCLKIPAGKSMALVGGSGSGKSTVVSLLQRFYDPLAGDILVDGVTIRKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDATMEEVIEAATASNAHNFISQLPQGYDTQVGERGVQMSGGQKQRIAIARAIIKKPQILLLDEATSALDSESERVVQEALDRAAVGRTTIIIAHRLSTIRNADVIAVVQNGKVMEMGSHDELIQNDNGLYSSLVRLQQTDQKSKGQDDHKFTCPPSSISNMDIVNNTSSRRLSLVSRSSSGNSAAPNRVSFNDQDCAKEEEKLPVRSLVGDRMGLLVQTVSAVLVACTMGLVIAWRLALVMIAVQPLVIISFYCRRVLLRSMSQKAIKAQDECCKLAAEAVTNLRTVSAFSSQERILKMLEKMQEGPRLETIKQSWYAGIGLGCSQSLNSLTWALDFWYGGKLIAQGYISSEALFQTFMILVSTGRVIADAGSMTTDLAKGSDAVSTVFAVLDRYTKIEPEDPDGYKPEKINGDVEFKDVHFAYPARPDVMIFLGFSIKIEAGKSTALVGQSGSGKSTIIALIERFYDPLKGLIMIDGRDVKSYHLRSLRKHIALVSQEPTLFAGTIKDNIVYGASDKIDESEIIEAARAANAHDFISSLRDGYDTLCGDKGVQLSGGQKQRIAIARAILMNPSVLLLDEATSALDSQSEKIVQDALERVMVGRTSIVVAHRLSTIQNCDLIAVLEKGRVVEKGTHSSLLAKGPSGAYYSLVNLQRTPHNTH* 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01080 1125 FunFam ABC transporter B family member 1 23 361 - -
Pte18g01080 1125 Gene3D ABC transporter type 1, transmembrane domain 14 374 IPR036640 GO:0005524|GO:0016020
Pte18g01080 1125 SMART AAA_5 905 1078 IPR003593 GO:0016887
Pte18g01080 1125 SMART AAA_5 389 575 IPR003593 GO:0016887
Pte18g01080 1125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 867 1118 IPR027417 -
Pte18g01080 1125 SUPERFAMILY ABC transporter transmembrane region 19 346 IPR036640 GO:0005524|GO:0016020
Pte18g01080 1125 Gene3D - 385 609 IPR027417 -
Pte18g01080 1125 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524|GO:0016887
Pte18g01080 1125 Gene3D - 868 1124 IPR027417 -
Pte18g01080 1125 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 878 1115 IPR003439 GO:0005524
Pte18g01080 1125 FunFam ABC transporter B family member 4 352 607 - -
Pte18g01080 1125 Pfam ABC transporter transmembrane region 37 305 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte18g01080 1125 Pfam ABC transporter transmembrane region 668 826 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte18g01080 1125 PANTHER ABC TRANSPORTER B FAMILY 13 602 IPR039421 -
Pte18g01080 1125 FunFam ABC transporter B family member 4 868 1123 - -
Pte18g01080 1125 CDD ABC_6TM_Pgp_ABCB1_D2_like 668 861 - -
Pte18g01080 1125 CDD ABC_MTABC3_MDL1_MDL2 362 600 - -
Pte18g01080 1125 CDD ABC_MTABC3_MDL1_MDL2 878 1118 - -
Pte18g01080 1125 Pfam ABC transporter 380 529 IPR003439 GO:0005524
Pte18g01080 1125 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
Pte18g01080 1125 SUPERFAMILY ABC transporter transmembrane region 668 863 IPR036640 GO:0005524|GO:0016020
Pte18g01080 1125 CDD ABC_6TM_Pgp_ABCB1_D1_like 36 335 - -
Pte18g01080 1125 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 668 843 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte18g01080 1125 Pfam ABC transporter 899 1046 IPR003439 GO:0005524
Pte18g01080 1125 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 37 327 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte18g01080 1125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 600 IPR027417 -
Pte18g01080 1125 ProSitePatterns ABC transporters family signature. 1018 1032 IPR017871 GO:0005524|GO:0016887
Pte18g01080 1125 Gene3D ABC transporter type 1, transmembrane domain 667 857 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01080 Pte-Chr18 23221332 23226636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01080 20 657 Calmodulin-binding Proteins AT2G36910 47.201 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01080 K05658 - cave:132181353 946.806