Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01078 ATGGAAAGACGTTTACTTTTCCTAGATCTGATTCATACCTCGCTGATACTGGGTTTTAGTTTCGTTTGTTTCTGGGGTTTTGCCGTCTCCGCGGTTTCTGAGGATGATGTTAAATGTCTTCAAGGTCTCAGGAATTCCCTCACTGACCCACAAGGCAAGTTGAGCTCTTGGAACTTTGATAACTCTTCGGTTGGATTCATATGCAGTTTTGTTGGTGTGTCTTGCTGGAACATCCAGGAGAACCGGATCATCAACCTTGAACTCAGAGATATGAAGTTGTCTGGGTCGATGTCAGAGTCGTTGAAGTACTGTGGGAGTCTTCAGAAGCTGGATCTATCTACAAATGAACTTTCTGGTACGATCCCATCTGAGATCTGTACTTGGTTGCCTTATTTAGTAACACTGGACCTGTCAAGTAATCACTTTTCTGGGTCTATACCTTCAACTCTTGTCAACTGTTCCTATTTAAATGAGCTGATGCTTTCGGAGAATCAGCTCACCGGTTCTATACCTTATGAATTTGGGAGCTTGGGTAGACTTCAGAAGTTTTCTGTGGCTGATAATGAACTCACGGGTACTGTGCCTTCGTTTTTCGATCGGTTTGGTAAGGATGCTTTTGCTGGAAATAGTGACCTTTGTGGTGGTCCTGTTGGATCAAAGTGTGGCGGGTTGAGTAAGAAGAATCTTGCCATTATCATAGCTGCTGGGGTGTTTGGTGCTGCGGCTTCTTTGTTATTGGCTTTTGGCTTGTGGTGGTGGTATCATTCAAGGTTGAGTAATAACAGGAAGAGTGGATACGGGGACGGGACAGGTGCAGATTGGGCTGACAGGTTAAGGGGTTATAGGCTTGTTCAAGTTTCTCTGTTTCAGAAACCATTGGTGAAAGTTAAGTTAGGTGATCTGATGGCGGCAACTAATAATTTTAGCCCTGAAAATATTGTAATGTCGACTAGGACCGGTACTACATACAAGGCTGATCTTCCTGATGGATCAACACTTGCAATCAAGAGGCTTAATACTTGTAAGCTTGGGGACAAGCAGTTTCGATCAGAGATGCATAGATTGGGGCAGCTCAGACACCCCAATTTGGCACCACTCCTGGGGTTCTGTGTGGTAGAAGAGGAAAAGTTTCTTGTTTATAAACATATGGCTAATGGAACGTTGTATTCCCTTTTGTATAACCATGGTGCTGTGTTGGATTGGTCAACTAGATTCAAGATTGGGTTAGGTGCTGTTAGGGGTCTAGCTTGGCTGCACCATGGATGCCACCCTCCAATCATTCACCAAAATATTTGTTCCAATGTCATTCTTGTAGATGAAGACTTCGACGCGAGGCTGATGGATTTTGGTTTGGCTAGGCTTATGGCTTCTGATTCTGATGGGAGTAGTTATGTCAATGGGGACTTGGGGGAACTTGGATACATAGCTCCTGAATATCCAAGCACCATGGTAGCTTCATTGAAAGGGGATGTTTATGGATTTGGGATAGTGCTTTTGGAGTTGATCACTGGGCAGAGACCTCTTGATGTTAGCAAAGCAGATGAAGGATTTAAGGGCAATTTAGTGGATTGGGTAAATATGCTTTCAGCTTCTGGAAGAATCAAAGATTGCATTGATGTGACAATAAATGGTAAGGGACATGATGAGGACATTTTGCAGTTTCTGAAAATAGCAAGTAATTGTGTGATTTCTAGACCCAAGGAGAGGTGGTCGATGTACCAGGTTTATCAATCATTGAGGAATATGTCCAAAGATCCTATCTTTTCTGAACAGGATGAGGAGTTTCCGTTGCTTTTCGGAAAGCCAGATAGTGGACCTGTATAA 1824 0.4331 MERRLLFLDLIHTSLILGFSFVCFWGFAVSAVSEDDVKCLQGLRNSLTDPQGKLSSWNFDNSSVGFICSFVGVSCWNIQENRIINLELRDMKLSGSMSESLKYCGSLQKLDLSTNELSGTIPSEICTWLPYLVTLDLSSNHFSGSIPSTLVNCSYLNELMLSENQLTGSIPYEFGSLGRLQKFSVADNELTGTVPSFFDRFGKDAFAGNSDLCGGPVGSKCGGLSKKNLAIIIAAGVFGAAASLLLAFGLWWWYHSRLSNNRKSGYGDGTGADWADRLRGYRLVQVSLFQKPLVKVKLGDLMAATNNFSPENIVMSTRTGTTYKADLPDGSTLAIKRLNTCKLGDKQFRSEMHRLGQLRHPNLAPLLGFCVVEEEKFLVYKHMANGTLYSLLYNHGAVLDWSTRFKIGLGAVRGLAWLHHGCHPPIIHQNICSNVILVDEDFDARLMDFGLARLMASDSDGSSYVNGDLGELGYIAPEYPSTMVASLKGDVYGFGIVLLELITGQRPLDVSKADEGFKGNLVDWVNMLSASGRIKDCIDVTINGKGHDEDILQFLKIASNCVISRPKERWSMYQVYQSLRNMSKDPIFSEQDEEFPLLFGKPDSGPV* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01078 607 SUPERFAMILY Protein kinase-like (PK-like) 286 579 IPR011009 -
Pte18g01078 607 CDD STKc_IRAK 316 579 - -
Pte18g01078 607 SUPERFAMILY L domain-like 32 203 - -
Pte18g01078 607 Gene3D Phosphorylase Kinase; domain 1 268 382 - -
Pte18g01078 607 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 383 601 - -
Pte18g01078 607 ProSiteProfiles Protein kinase domain profile. 308 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte18g01078 607 Pfam Leucine rich repeat 130 190 IPR001611 GO:0005515
Pte18g01078 607 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 269 382 - -
Pte18g01078 607 Pfam Protein kinase domain 319 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte18g01078 607 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 85 580 - -
Pte18g01078 607 Gene3D Transferase(Phosphotransferase) domain 1 383 596 - -
Pte18g01078 607 Gene3D Ribonuclease Inhibitor 33 222 IPR032675 -
Pte18g01078 607 Pfam Leucine rich repeat N-terminal domain 34 76 IPR013210 -
Pte18g01078 607 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 33 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01078 Pte-Chr18 23187508 23190152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01078 21 608 Receptor kinase-like Gene Family AT3G28450 64.587 0.0 796
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Pte18g01078 Pkinase 2.1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01078 - - qsa:O6P43_009034 952.584