Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01070 ATGGCTTTAAGGATTAGCTTAGTTTTCCTTGTGTCATTTGCCATTGTAATCCCATGCCTACATGCTGGCATTGCTGAATATGACGATTTCTTGAAGAAAGCAGCGGCCCATGCCCAAGAAGATGCCCTTAAAGCGTATGATCCGCACCCAGAAAACATCACTGATGAATTCAATGCACAAGTTCGAAGGATCCCCTTGGTTGAAGACGGCAACAACACAAGGAGAAACTTGGGTAAGAGATACAGAGGGCCGTGCAGGGCAATCAATCCAATTGACATTTGCTGGCGATGCAAGGGAGACTGGTCTAAAGACCGAAAGAAGTTAGCAAAATGTGTTATGGGGTTTGGGCATAAGACCACTGGAGGGCTCTACGGGCGGTACTATGTGATCACTGACCCTTCAGACAATGATGTTGTAAACCCAAGACCAGGAACTCTCCGCCATGCAGCGAGTCAGCGGAGACCTTTGTGGATCATCTTTGCTAGAAACATGGTGATCAGACTGAGGAAAGAGTTGTTGGTGAGCAGTGATAAGACCATTGATGGTCGTGGGGCCAGGGTGCATATTGCTCATGGTGCTGGGATTTCAATTCAGTTTGCTAGGAATATTATTATTCATAATCTTCGTATTCACGACACTGTTAGAACTGAAGGTGGTTTTATCAGAGATTCAGCAAATCATGTCGGTATAAGGACAGCTGCTGATGGAGATGGCATCAGTATCTTTTCTTCTTCAAACATTTGGATCGATCGTATTTCAATGTTTAGATGCGCAGATGGCCTTATTGATGTGGTACAAGGTTCTACAGCAATCACCATATCAAATTGTCACTTCGCCAAACACAATGACGTGATGCTTTTTGGTGCGAGTGACACTTACAAAAGGGATAAGATTATGCAAATCACTGTAGCATTCAACCATTTTGGAAAGGGCTTGATACAAAGGATGCCTAGATGCAGGTGGGGTTTCGTACATGTTGTAAACAATGACTACACTCATTGGCTCATGTACGCCATTGGAGGTAGCGCTGGCCCTACCATTGTCAGCCAAGGCAACCGTTTCATTGCTCCTCCTAATAATGCAGCAAAGGAGGTAACACATAGACACTACGCTACACCAGCAGTGTGGAAGAAGTGGCAATGGATATCGCAGAAGGACCTATTGATGAATGGTGCAAGATTCATCCAATCTGGACCCCCTCTTCATAGGAACGCTTTCTCCCACAAAGGAATGATCGCCCCCCAGGATGGAAAAGCCGTTACGTGGCTTACAAGGGTTTCAGGAGCTCTCAAGTGTATCCCAGGGAAACCTTGCTAG 1317 0.4556 MALRISLVFLVSFAIVIPCLHAGIAEYDDFLKKAAAHAQEDALKAYDPHPENITDEFNAQVRRIPLVEDGNNTRRNLGKRYRGPCRAINPIDICWRCKGDWSKDRKKLAKCVMGFGHKTTGGLYGRYYVITDPSDNDVVNPRPGTLRHAASQRRPLWIIFARNMVIRLRKELLVSSDKTIDGRGARVHIAHGAGISIQFARNIIIHNLRIHDTVRTEGGFIRDSANHVGIRTAADGDGISIFSSSNIWIDRISMFRCADGLIDVVQGSTAITISNCHFAKHNDVMLFGASDTYKRDKIMQITVAFNHFGKGLIQRMPRCRWGFVHVVNNDYTHWLMYAIGGSAGPTIVSQGNRFIAPPNNAAKEVTHRHYATPAVWKKWQWISQKDLLMNGARFIQSGPPLHRNAFSHKGMIAPQDGKAVTWLTRVSGALKCIPGKPC* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01070 438 Pfam Pectate lyase, N terminus 24 77 IPR007524 GO:0030570
Pte18g01070 438 PRINTS Pollen allergen Amb family signature 379 403 IPR018082 -
Pte18g01070 438 PRINTS Pollen allergen Amb family signature 409 432 IPR018082 -
Pte18g01070 438 PRINTS Pollen allergen Amb family signature 337 356 IPR018082 -
Pte18g01070 438 PRINTS Pollen allergen Amb family signature 135 160 IPR018082 -
Pte18g01070 438 PRINTS Pollen allergen Amb family signature 111 128 IPR018082 -
Pte18g01070 438 PRINTS Pollen allergen Amb family signature 171 187 IPR018082 -
Pte18g01070 438 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Pte18g01070 438 PRINTS Pollen allergen Amb family signature 235 256 IPR018082 -
Pte18g01070 438 PANTHER PECTATE LYASE 18-RELATED 38 436 IPR045032 GO:0030570
Pte18g01070 438 Gene3D - 88 431 IPR012334 -
Pte18g01070 438 SUPERFAMILY Pectin lyase-like 70 432 IPR011050 -
Pte18g01070 438 SMART amb_all 163 360 IPR002022 -
Pte18g01070 438 Pfam Pectate lyase 169 354 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01070 Pte-Chr18 23080795 23082669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01070 3 439 Polysaccharide Lyase AT5G15110 54.777 2.08e-180 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01070 K01728 - qsa:O6P43_004519 626.706