Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01052 ATGGAGAAGAATGGTGTTGACAAAGTTGACGATGAGATGTTGCCTGGTTTCCGGTTTCATCCAACAGATGAGGAGCTTGTTGGGTTTTATCTAGTCAGAAAAATTCAACAGCGGCCTCTCCCAATTGAGCTAATTAAGCAGGTGGATATATATCAATATGATCCTTGGGATCTTCCAAAGCTGGCAACTGATGGTGAGAAGGAATTGTATTTTTACTGCCCAAGGGACCGTAAATACAGAAATAGCGCACGACCCAATCGAGTAACAGCAGCTGGATTTTGGAAGGCAACTGGGACCGACAGGCCAATCTACTCCTCTGATGGAAAGTGCATCGGTTTGAAGAAGTCCTTAGTGTTCTACAGAGGTAGAGCTGCCAAAGGATTCAAGACTGACTGGATGATGCATGAGTTTCGCTTACCTCCCTTGTCAGACTTAGCTTCACCCAAGAAGGTTTCGAACAAAAGCTTTCCTGCAAATGATGCGTGGGCTATTTGTAGGATATTCAAGAAAACAACCGCCATGGCGCAGAGAGCCTTTTCTTATTCGTGGATGGCTGCACTGCCAGAAGCCATTGTCTCTGCTGATACAATCACTCAAAGTGGAAACTGTCAACAATTCAGTTCTGAGAATATTTCTTGCACAACTGAAATCGGAACTGTCCTACAATTTTGCGTGAATAGTGACTTACAACAAGCATCCAGCGCAGATTTCTCTGGTGCAGATATCTCTCCATATAAACCCATTAGTCCTACAATCTCCAAGCCATCTCAGTTTCCTGCTTCGAATGGAGACTTCTCCAACAGTATGGGATTCCCTGAAGTGTCAGAACCAAACAAATCCACCATGGGTGGCAGCTCGATTCTTTTCAACCCTGACTTGATAGACTTTGATGGGTCAAATCAGCAGTTTAATCGCTTCTCTGATATGCAAAATCACATGAACAACAAAGAGAGTGAGGAAAATGGTTCTAGGAAGAGCTCAGCTCAAGTTCAAGTAAGTGATCAGTGGGGTACAGACAAACATATTCGATTTCCTTTCAGCTTATCACCTGATGATGCTTGGAAACCTTTAACATGGGATTCAACCACTTGTCCCAACGAAATGTCCTCTGGCTATTCTACGAATAAATGTTGTAACTGA 1140 0.4342 MEKNGVDKVDDEMLPGFRFHPTDEELVGFYLVRKIQQRPLPIELIKQVDIYQYDPWDLPKLATDGEKELYFYCPRDRKYRNSARPNRVTAAGFWKATGTDRPIYSSDGKCIGLKKSLVFYRGRAAKGFKTDWMMHEFRLPPLSDLASPKKVSNKSFPANDAWAICRIFKKTTAMAQRAFSYSWMAALPEAIVSADTITQSGNCQQFSSENISCTTEIGTVLQFCVNSDLQQASSADFSGADISPYKPISPTISKPSQFPASNGDFSNSMGFPEVSEPNKSTMGGSSILFNPDLIDFDGSNQQFNRFSDMQNHMNNKESEENGSRKSSAQVQVSDQWGTDKHIRFPFSLSPDDAWKPLTWDSTTCPNEMSSGYSTNKCCN* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01052 379 Gene3D NAC domain 22 175 IPR036093 GO:0003677|GO:0006355
Pte18g01052 379 ProSiteProfiles NAC domain profile. 13 170 IPR003441 GO:0003677|GO:0006355
Pte18g01052 379 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 300 - -
Pte18g01052 379 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Pte18g01052 379 FunFam NAC domain-containing protein 35 22 173 - -
Pte18g01052 379 SUPERFAMILY NAC domain 12 170 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01052 Pte-Chr18 22936238 22938487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01052 2 184 NAC Transcription Factor Family AT5G39820 68.687 1.66e-93 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte18g01052 NAM 1.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01052 - - pvy:116112178 494.582