Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01050 ATGGGTAGACCGCCTTGTTGTGATAAAGAAGGAGTCAAGAAAGGACCCTGGACCCCTGAAGAAGACATTATACTGGTATCTTACATACAAGAACATGGTCCTGGAAATTGGAGGGCAGTTCCTACCAATACAGGGCTATTGAGGTGCAGTAAGAGTTGCAGGCTTAGATGGACTAATTATCTTAGACCTGGAATTAAACGTGGAAATTTTACTGAACGGGAGGAGAAGATGATCATCCACCTTCAAGCCCTTCTAGGCAACAGGTGGGCTGCTATAGCTTCATATCTGCCTCAGAGAACAGATAATGACATTAAGAACTATTGGAACACCCATTTAAGGAAGAAGCTCAAGAAACTTGAAGTTGGTAGCAGTAAAGGTCACTTTGAAGATGGATCTTCTTCATCTCCGCACTCAATGTCTAGAGGTCAGTGGGAAAGAAGACTCCAAACCAATATCCACATGGCCAAGCGAGCTCTCAGCGAGGCACTTTCAGCTCAGACGAATAGCTCTCTATCTGATCAGTTGAACCCGCCTGACGTGTCACTGTTTGCCTCTAGTAAATCACTGCAAAATTCATCAACCTATGCAGCAAGCGCCGATAATATAGCTCGGCTACTCAAAGGATGGATGGGAAATTCTTCAAATCCAGCTCGGGCTAACTCATCTGCTACCACTCAGAACTCATTCAACAACATGGCTTCAGGGATTGATACAGCTTCAAGTGATCAAGGAACACCGAGTGCAGCAAACGGGGGTGAATTTGGACTTTCTGATAATTTTGAATCTCTATTGGAGTCTCTTGACTCGTCAACTTCTGAATTTTCCCAATCTCTCTCACCTGAACCTTCTACTTTTCAAGATGAAAGCAAACCTAATGACCGGGACCATGAAATGCACTTGTCTTTCATCGAGAAATGGCTTTTTGATGATAGCATTTGTCAGGAGAAAATATCCTACTGTAGTGATACCATAGTTGCAGGTGTTGCTGATGTTTTCTGA 999 0.4354 MGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTEREEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLRKKLKKLEVGSSKGHFEDGSSSSPHSMSRGQWERRLQTNIHMAKRALSEALSAQTNSSLSDQLNPPDVSLFASSKSLQNSSTYAASADNIARLLKGWMGNSSNPARANSSATTQNSFNNMASGIDTASSDQGTPSAANGGEFGLSDNFESLLESLDSSTSEFSQSLSPEPSTFQDESKPNDRDHEMHLSFIEKWLFDDSICQEKISYCSDTIVAGVADVF* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01050 332 SMART sant 66 114 IPR001005 -
Pte18g01050 332 SMART sant 13 63 IPR001005 -
Pte18g01050 332 FunFam MYB-related transcription factor 13 66 - -
Pte18g01050 332 CDD SANT 69 112 IPR001005 -
Pte18g01050 332 CDD SANT 16 61 IPR001005 -
Pte18g01050 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pte18g01050 332 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 258 - -
Pte18g01050 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pte18g01050 332 MobiDBLite consensus disorder prediction 271 286 - -
Pte18g01050 332 MobiDBLite consensus disorder prediction 215 252 - -
Pte18g01050 332 MobiDBLite consensus disorder prediction 123 143 - -
Pte18g01050 332 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte18g01050 332 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pte18g01050 332 MobiDBLite consensus disorder prediction 271 294 - -
Pte18g01050 332 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte18g01050 332 Gene3D - 13 66 - -
Pte18g01050 332 FunFam Transcription factor MYB30 68 126 - -
Pte18g01050 332 Gene3D - 69 134 - -
Pte18g01050 332 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte18g01050 332 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte18g01050 332 MobiDBLite consensus disorder prediction 127 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01050 Pte-Chr18 22922757 22924589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01050 1 310 MYB Transcription Factor Family AT5G62470 51.685 5.68e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte18g01050 Myb_DNA-binding 9.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01050 K09422 - qsa:O6P43_004488 410.609