Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01048 ATGAGGAAGCGTCAAGTGGTGCTCAGAAAAGAAGATTCTTCAAGAAGCTCAACCAATTCGTCCTTCGCAATCCGCAGTGTCAGATATGGAGAATGCCAAAAGAATCATGCAGCTAATGTTGGAGGATACGCCGTTGACGGGTGCAGAGAGTTCATGGAGAGTGGGGAAGAAGGGACAAATGCGGCTCTTACCTGTGCTGCTTGTGGATGTCACAGAAACTTTCATAGAAGAGAGGTGGAGACAGATCTTCTTTCGTAG 258 0.4729 MRKRQVVLRKEDSSRSSTNSSFAIRSVRYGECQKNHAANVGGYAVDGCREFMESGEEGTNAALTCAACGCHRNFHRREVETDLLS* 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01048 85 Pfam ZF-HD protein dimerisation region 27 79 IPR006456 -
Pte18g01048 85 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 28 79 IPR006456 -
Pte18g01048 85 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 29 78 IPR006456 -
Pte18g01048 85 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 3 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01048 Pte-Chr18 22902550 22903120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01048 1 84 Zinc finger-homeobox gene family AT3G28917 75.281 1.09e-37 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pte18g01048 ZF-HD_dimer 7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01048 - - vvi:100262881 152.91