Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte18g01045 | ATGCCATCACCTTCTGCTACATCCACGGACCCAACTTCTCTGAAATGTGCTGCTTGTGGTTGCCACAGAAATTTCCACCGCCGTGAACCGGAGGATCAGCCTATCGTTCCAGCTACCCATGTCTTAGAATTTCAACCCCATCATCGACATCATCCTCTACCTCCTCAACCACTTCCTGCTCCAAATCGAAGTCCCAATTCTGCTTCCCCACCTCCGATCTCATCTTCTTATTTCCCATCTGCACCACACATGCTTCTAGCCCTATCTTCTGGCTTATCAGCTCCGCATGAAAACGTAGCTCCACCTTCGCACGCTTTGGTGACGCCAAGTTCAAGTACCCGGAAGCGTTTCAGGACAAAGTTCAGTCAAGAACAGAAGGATAAGATGTACCAATTTGCTGAGAGAGTTGGGTGGAAGATGCAGAAGAGAGATGATGACTTGGTCCAAGAATTCTGCAATGAAATTGGGGTTGATAGAGGAGTGTTGAAAGTCTGGATGCACAACAATAAAAATACCTTGGGGAAGAGAGATTTTAATGGCAATAGGAGCATCCATGAGCTTGAGCGGGAGCATGAGCACATCACTCACAACAATGAAATGGATGAAAACAACATCCCCAACAACAGCGACAACAATGGTAGCAGCTTGGATCCAAATCACTACCAGAATGATAATGGGGCAAATATTGGTACCAATGGATCATCTTCTTCCTCTTGA | 717 | 0.463 | MPSPSATSTDPTSLKCAACGCHRNFHRREPEDQPIVPATHVLEFQPHHRHHPLPPQPLPAPNRSPNSASPPPISSSYFPSAPHMLLALSSGLSAPHENVAPPSHALVTPSSSTRKRFRTKFSQEQKDKMYQFAERVGWKMQKRDDDLVQEFCNEIGVDRGVLKVWMHNNKNTLGKRDFNGNRSIHELEREHEHITHNNEMDENNIPNNSDNNGSSLDPNHYQNDNGANIGTNGSSSSS* | 239 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte18g01045 | 238 | Gene3D | - | 106 | 175 | - | - | |
Pte18g01045 | 238 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 1 | 29 | IPR006456 | - | |
Pte18g01045 | 238 | MobiDBLite | consensus disorder prediction | 195 | 238 | - | - | |
Pte18g01045 | 238 | Coils | Coil | 184 | 204 | - | - | |
Pte18g01045 | 238 | Pfam | ZF-HD protein dimerisation region | 5 | 30 | IPR006456 | - | |
Pte18g01045 | 238 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 4 | 173 | - | - | |
Pte18g01045 | 238 | MobiDBLite | consensus disorder prediction | 200 | 238 | - | - | |
Pte18g01045 | 238 | FunFam | Zinc-finger homeodomain protein 2 | 103 | 175 | - | - | |
Pte18g01045 | 238 | SUPERFAMILY | Homeodomain-like | 104 | 175 | IPR009057 | - | |
Pte18g01045 | 238 | NCBIfam | homeobox domain, ZF-HD class | 114 | 171 | IPR006455 | - | |
Pte18g01045 | 238 | MobiDBLite | consensus disorder prediction | 27 | 76 | - | - | |
Pte18g01045 | 238 | MobiDBLite | consensus disorder prediction | 51 | 68 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte18g01045 | Pte-Chr18 | 22874030 | 22875107 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte18g01045 | 1 | 170 | ZF-HD Transcription Factor Family | AT5G15210 | 52.632 | 1.23e-48 | 159 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | zf-HD | Pte18g01045 | ZF-HD_dimer | 5.7e-11 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte18g01045 | - | - | qsa:O6P43_009085 | 265.774 |