Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01045 ATGCCATCACCTTCTGCTACATCCACGGACCCAACTTCTCTGAAATGTGCTGCTTGTGGTTGCCACAGAAATTTCCACCGCCGTGAACCGGAGGATCAGCCTATCGTTCCAGCTACCCATGTCTTAGAATTTCAACCCCATCATCGACATCATCCTCTACCTCCTCAACCACTTCCTGCTCCAAATCGAAGTCCCAATTCTGCTTCCCCACCTCCGATCTCATCTTCTTATTTCCCATCTGCACCACACATGCTTCTAGCCCTATCTTCTGGCTTATCAGCTCCGCATGAAAACGTAGCTCCACCTTCGCACGCTTTGGTGACGCCAAGTTCAAGTACCCGGAAGCGTTTCAGGACAAAGTTCAGTCAAGAACAGAAGGATAAGATGTACCAATTTGCTGAGAGAGTTGGGTGGAAGATGCAGAAGAGAGATGATGACTTGGTCCAAGAATTCTGCAATGAAATTGGGGTTGATAGAGGAGTGTTGAAAGTCTGGATGCACAACAATAAAAATACCTTGGGGAAGAGAGATTTTAATGGCAATAGGAGCATCCATGAGCTTGAGCGGGAGCATGAGCACATCACTCACAACAATGAAATGGATGAAAACAACATCCCCAACAACAGCGACAACAATGGTAGCAGCTTGGATCCAAATCACTACCAGAATGATAATGGGGCAAATATTGGTACCAATGGATCATCTTCTTCCTCTTGA 717 0.463 MPSPSATSTDPTSLKCAACGCHRNFHRREPEDQPIVPATHVLEFQPHHRHHPLPPQPLPAPNRSPNSASPPPISSSYFPSAPHMLLALSSGLSAPHENVAPPSHALVTPSSSTRKRFRTKFSQEQKDKMYQFAERVGWKMQKRDDDLVQEFCNEIGVDRGVLKVWMHNNKNTLGKRDFNGNRSIHELEREHEHITHNNEMDENNIPNNSDNNGSSLDPNHYQNDNGANIGTNGSSSSS* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01045 238 Gene3D - 106 175 - -
Pte18g01045 238 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 1 29 IPR006456 -
Pte18g01045 238 MobiDBLite consensus disorder prediction 195 238 - -
Pte18g01045 238 Coils Coil 184 204 - -
Pte18g01045 238 Pfam ZF-HD protein dimerisation region 5 30 IPR006456 -
Pte18g01045 238 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 4 173 - -
Pte18g01045 238 MobiDBLite consensus disorder prediction 200 238 - -
Pte18g01045 238 FunFam Zinc-finger homeodomain protein 2 103 175 - -
Pte18g01045 238 SUPERFAMILY Homeodomain-like 104 175 IPR009057 -
Pte18g01045 238 NCBIfam homeobox domain, ZF-HD class 114 171 IPR006455 -
Pte18g01045 238 MobiDBLite consensus disorder prediction 27 76 - -
Pte18g01045 238 MobiDBLite consensus disorder prediction 51 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01045 Pte-Chr18 22874030 22875107 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01045 1 170 ZF-HD Transcription Factor Family AT5G15210 52.632 1.23e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pte18g01045 ZF-HD_dimer 5.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01045 - - qsa:O6P43_009085 265.774