Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01043 ATGGGGAGATCACCCTGCTGTGATAAGGTGGGTTTAAAGAAAGGGCCATGGACACCGGAGGAGGATCAGAAGCTCTTGGCATATATTGAAGAGCATGGACATGGAAGCTGGCGTGCCCTGCCAGCTAAAGCTGGTCTTCAGAGATGTGGAAAGAGCTGCAGACTAAGGTGGACTAATTATCTTAGACCTGATATTAAGAGGGGAAAGTTCAGTTTGCAAGAAGAGCAAACCATCATTCAACTCCATGCACTCCTGGGGAACAGATGGTCAGCCATAGCCACTCACTTGCCTAAGAGAACAGATAATGAAATTAAGAACTATTGGAACACGCATCTGAAGAAAAGACTAGCAAAAATGGGAATCGACCCAGTCACCCACAAGCCTAGGAATGATGCTCTTCTCTCAGTTGACGGCCATACTAAAAATGCAGCCAACCTTAGTCACATGGCTCAGTGGGAAAGTGCCAGGCTTGAAGCTGAAGCCAGACTAGTTAGAGAATCAAAGCTACGTTCACATTCATTTCAGAAACAGATTGGAAACTCTGGCTTCATGGGTTCTTCATCTGCTTCTGCTTCAAGTATTGCAGCAACAGCTAATCCACTTGTGAGTAAATCAGATACAACCCCCATGTCATCTCGGTCTCTAGATGTTCTGAAAGCTTGGAATTGTGGGTGGCTAAAGTCCACTGAAGTCAACGGGAATACTGCTGTTGCAGACCTCGAGTCTCCTACTTCCACCCTCACATTTTCTGAGACTGCACCACCAATGATGACAGGTGGACTTGTGGAGAGTACCAACACTGTGATTGAATTTGTTGGCAGTACTTCAGGTTCTTCTGATCATGCTGGAATTGTGAAGGAAGAAGGTGAACAAGATTGGAAGAGTTACGATAATTCGACTCACTTGCCTGAATACAAAGAGGGTATAGAACACTCAATGTCCTTCACGTCTGATTTGCATGACATGACAATGTCTTTAATGGAAGGGGCATGGTCATCTGTGTCCCTGAGAAATAGTGGTGGAAATCTGAATCTTGGAACTTTGATGGCCGACGAGGGGTTCACCCATCTATTGCTAAATAATTCGGACGATCAAAGTGTGTCAGACGGCGCAGGCGGTGGGGAGTCTGATAATGGTGGTGGCAGTGGTAGTGACTACTATGAAGACAACAAGAATTACTGGAATAGTATTCTTAATTTAGTGAATTCTTCTCCATCAGATTCGCCAATGTTCTGA 1236 0.4506 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVTHKPRNDALLSVDGHTKNAANLSHMAQWESARLEAEARLVRESKLRSHSFQKQIGNSGFMGSSSASASSIAATANPLVSKSDTTPMSSRSLDVLKAWNCGWLKSTEVNGNTAVADLESPTSTLTFSETAPPMMTGGLVESTNTVIEFVGSTSGSSDHAGIVKEEGEQDWKSYDNSTHLPEYKEGIEHSMSFTSDLHDMTMSLMEGAWSSVSLRNSGGNLNLGTLMADEGFTHLLLNNSDDQSVSDGAGGGESDNGGGSGSDYYEDNKNYWNSILNLVNSSPSDSPMF* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01043 411 CDD SANT 69 112 IPR001005 -
Pte18g01043 411 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte18g01043 411 CDD SANT 16 61 IPR001005 -
Pte18g01043 411 Gene3D - 69 116 - -
Pte18g01043 411 FunFam MYB transcription factor 69 116 - -
Pte18g01043 411 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte18g01043 411 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pte18g01043 411 SMART sant 66 114 IPR001005 -
Pte18g01043 411 SMART sant 13 63 IPR001005 -
Pte18g01043 411 Gene3D - 13 66 - -
Pte18g01043 411 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte18g01043 411 MobiDBLite consensus disorder prediction 361 385 - -
Pte18g01043 411 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte18g01043 411 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 229 - -
Pte18g01043 411 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte18g01043 411 FunFam MYB-related transcription factor 13 66 - -
Pte18g01043 411 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01043 Pte-Chr18 22861453 22863858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01043 343 412 MYB Transcription Factor Family AT3G01140 52.113 3.19e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte18g01043 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01043 K09422 - tcc:18601559 587.8