Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01042 ATGGAACTTGTACCTATAATTGAAAACGAGGATGATGATCCTATTGAACTACCCCCTGGATTTCGGTTTCATCCAACTGATGAAGAGCTCATAATTCATTACCTTTCCCCTAAGGTTCTTGATAGCTGCTTCTCTGCTGCAGCGATTACTGAGGTTGATTTGAACAAGTGCGAGCCATGGGATTTGCCTTGGAGAGCTAAATTAGGGGAAAAGGAATGGTATTTCTTTTGCGTTAGAGAAAGAAAATACCCAACTGGTTTAAGAACAAACAGGGCTACTGAAGCTGGGTATTGGAAAGCCACAGGCAAAGACAAAGAGATATACAGAGCAACAGAACGTATTGGCATGAAGAAGACTTTGGTATTCTACAAAGGCAGAGCTCCCACAGGAGAAAAGACTAATTGGGTTATGCATGAATTTAGATTAGACGGGGAAATTTCTTGTCAGTACAATCACCCCGAAGCCAATGGGGTCAAGCTTTTGCTCTGTTTGTCCTTTTTCCTTTTCTGTATTATAGGATCATTTTCGTTAATGCTAAAGTTGGATACTTTCTTGTTTTTCTTTCAGAATGAGTGGGTGATCTGCAGAGTTTTCCAGAAGAATCCTGGTGGGAAAAAAACACAAATTTCAGGGTGGGCGAGTTTGAGCTCCCATGATAGCCTACTTCCTTCAAGTCCTTTGCCTCCATTAACGGATTCTCCAGCACATGATGAAACAAAGTCTACTGTTGGTGAAGATGATTCCCACATGACCTGCTTCTCTGATCCAGTGAAGCATCAAAAGACAAAAGATGACATGATTAATAATAGCTTTGACAATGGCTTCTTACCTTCTTCATCTACTTCAAACCTGTCCCCTGACACTACCCATGTTTCACTAACTTCACCAAAAACAAAGGCAACAGAATCATTCCCATTCGCACAAGTTGCATCACAAATTGGCATTTTACAATACCCTGATTACTTAGTGATGCACGATCAATCTATACCAAGGATGATGCTTCATGCAAAAGCAGAGTTGTCACAGCAAAGAGACCTTAGGATGACTGGTACGCCTTCAAGTATGCCAAACCATGAAATGGTTCTCAAATGTTTTGGTGATCAAGACTACATGCTATCATCAACTGCTGCTGGACCTTGTGATACGGGTTGCCTTTGGAATGACTAA 1167 0.4122 MELVPIIENEDDDPIELPPGFRFHPTDEELIIHYLSPKVLDSCFSAAAITEVDLNKCEPWDLPWRAKLGEKEWYFFCVRERKYPTGLRTNRATEAGYWKATGKDKEIYRATERIGMKKTLVFYKGRAPTGEKTNWVMHEFRLDGEISCQYNHPEANGVKLLLCLSFFLFCIIGSFSLMLKLDTFLFFFQNEWVICRVFQKNPGGKKTQISGWASLSSHDSLLPSSPLPPLTDSPAHDETKSTVGEDDSHMTCFSDPVKHQKTKDDMINNSFDNGFLPSSSTSNLSPDTTHVSLTSPKTKATESFPFAQVASQIGILQYPDYLVMHDQSIPRMMLHAKAELSQQRDLRMTGTPSSMPNHEMVLKCFGDQDYMLSSTAAGPCDTGCLWND* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01042 388 SUPERFAMILY NAC domain 15 200 IPR036093 GO:0003677|GO:0006355
Pte18g01042 388 ProSiteProfiles NAC domain profile. 17 200 IPR003441 GO:0003677|GO:0006355
Pte18g01042 388 Gene3D NAC domain 26 203 IPR036093 GO:0003677|GO:0006355
Pte18g01042 388 FunFam NAC domain-containing protein 100-like 26 164 - -
Pte18g01042 388 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 278 - -
Pte18g01042 388 MobiDBLite consensus disorder prediction 226 248 - -
Pte18g01042 388 Pfam No apical meristem (NAM) protein 18 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01042 Pte-Chr18 22852101 22853589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01042 15 387 NAC Transcription Factor Family AT5G07680 44.357 1.56e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte18g01042 NAM 1.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01042 - - cit:102621297 375.17