Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01036 ATGTCTTCTCACGATAACTTGATCGGTTCTTCGGCACCCACTAATAACGATTCCGAAAGCCAGAACGAAACCCGGACGAGAAGACTCTCTATGCTACTGCCTTTGCTGCTTAATCTTGCTTCTCAAAACCAAATCCCTCATCAGGAATCGGAATCGGAATCGGGGCCGGAAATCAACACTGATTCTCGGACGCGGTTTACGGTCATAATGGTGGACAGGCGCACGGGTGCTATGCTTGTGATGGAGGGTACTGGAGATATCGACAACTTGTTTGAACATCTATCGAGTAAGTCTGGGGTGTCTCCTGCATCAAAGGCGTCGATCGACGCCATGCCTAGGGTGGTGATCCACGAAGCGGGCGCAGAGTGTGCGATTTGCTTAGAAACGTACGAGATTGAGAGCGAAGCTAGAGAGATGCCCTGTAAGCATAGGTTTCATTCTGGATGCATCGAGAAGTGGTTGGGAGTTCACGGGTCGTGTCCGATGTGCCGGTTTATGATGCCGGCGGAGAAAACAGATAGCAACGCTGGCGGAGGAAGTGAAGGAGGGGAAGACGGTGATGAGAGCAGAGAGGAGGTTGTTTCCTTGCGGCTATGGGTGCGAGATGAGACCTCTGAAAGTAGCGATCCAATGGACGTGGATGTGGAGTCGGGTTTAGGTGCTCGGGCTGTAGATCTGGACCTGAACCGACGAGAAGAAGATCCGTATGAGTATGATGCTGCAGATGACTCAACGTCAACGACACCTGAAACCAATTTAGAATAA 765 0.5098 MSSHDNLIGSSAPTNNDSESQNETRTRRLSMLLPLLLNLASQNQIPHQESESESGPEINTDSRTRFTVIMVDRRTGAMLVMEGTGDIDNLFEHLSSKSGVSPASKASIDAMPRVVIHEAGAECAICLETYEIESEAREMPCKHRFHSGCIEKWLGVHGSCPMCRFMMPAEKTDSNAGGGSEGGEDGDESREEVVSLRLWVRDETSESSDPMDVDVESGLGARAVDLDLNRREEDPYEYDAADDSTSTTPETNLE* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01036 254 SMART ring_2 123 163 IPR001841 -
Pte18g01036 254 MobiDBLite consensus disorder prediction 43 62 - -
Pte18g01036 254 FunFam E3 ubiquitin-protein ligase RNF181 91 170 - -
Pte18g01036 254 MobiDBLite consensus disorder prediction 171 254 - -
Pte18g01036 254 Pfam Ring finger domain 122 164 IPR001841 -
Pte18g01036 254 MobiDBLite consensus disorder prediction 189 208 - -
Pte18g01036 254 MobiDBLite consensus disorder prediction 1 25 - -
Pte18g01036 254 SUPERFAMILY RING/U-box 116 168 - -
Pte18g01036 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 170 IPR013083 -
Pte18g01036 254 ProSiteProfiles Zinc finger RING-type profile. 123 164 IPR001841 -
Pte18g01036 254 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 39 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01036 Pte-Chr18 22788646 22789686 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01036 14 225 C3H Transcription Factor Family AT1G26800 38.785 5.07e-40 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01036 - - qsa:O6P43_004477 154.836