Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01034 ATGGCCAGGAAGAGAAAAGCTGTTGGAGTAGATGATAATTCAAGTGAAGGAACTATGAGTTGGGATAAGATGGTAAAGGAGGCTGCAAATGCTCTCGGAGGAGCTCGCCGAGCCCGGAACCGATTTGTAGGTGTCCGTCAAAGGCCATCAGGTAGATGGGTGGCTGAGATAAAGGACACTATACAGAAGATAAGGGTGTGGTTAGGCACTTTTGACACAGCTGAGGAAGCAGCTAGGGCCTATGATGAGGCTGCTTGCTTGTTGAGAGGTAACAACACTAGAACAAACTTCTGGCCTTGTTCTTCATCTTCATCCACTCCAGCTCTCCCTACAAAGATTACCAATCTTCTACTTCAAAGGCTGAAAGCAAGGAATAATTCCTGTTCTTCTTCGTCCACCACCCTTCCTCTTAATCAACAAGCAACAGACGAGTACAGAGAAGAAGAATCAATATATTCTCCAAATCAATTCAGTGGTTTCCTTGATGGTGCTGACGATTATAGTGCTAGCAACAATGGCATCAGCAATGACAACAGTGTAGATGTTGATTATATGACATGCAGTACTCTCCAATCTTGTTTGACAGAAAATAATGAATATGGTGTAGGAGGAGATATGAATCTTGGATATTTGAGCAATCTAGGGCAAACTTCAAGCGTTAATGAAAGCTCTGAAGGTGAAGGAAGAGGGGATACGGAAGGTGAAAGCACTGACTTGAGTGAATTGGATTTTCAATTTTTGGACAATATCGGTCCACCGAATTACTATTATCCTTTTGAGATGGCAGAAGACATCGGGGAGCCTGTTGAGCCAGAGAACTATGCTGATGAACCCTCTATGCTTCGAGCAGCCATGAAGAGGATGAAGTATGAAAGGAAATTCTCAGCTTCTCTTTATGCCTTCAACGGGATTCCCGAATGCTTGAAACTAAAGCTTGAATCAAGAAACTTCAAGTCTGATCAGCCAACAAGCCTAAAGTTGCGCAACAACAACAACAGCGAGGAAACTATGGTGGATAATCTATTCAATGGAGTAACAGATAAGAGAAAGGAGGAGAGCTTGGCAACTTCAACTGATCACATGGAATCACCTACTACTTTCTCATCAAACATGGATGGAGACTTGTCTCTTTGGAATTCGTTGGATCCCATTTGCTTTGTTAGTTAA 1167 0.4276 MARKRKAVGVDDNSSEGTMSWDKMVKEAANALGGARRARNRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGNNTRTNFWPCSSSSSTPALPTKITNLLLQRLKARNNSCSSSSTTLPLNQQATDEYREEESIYSPNQFSGFLDGADDYSASNNGISNDNSVDVDYMTCSTLQSCLTENNEYGVGGDMNLGYLSNLGQTSSVNESSEGEGRGDTEGESTDLSELDFQFLDNIGPPNYYYPFEMAEDIGEPVEPENYADEPSMLRAAMKRMKYERKFSASLYAFNGIPECLKLKLESRNFKSDQPTSLKLRNNNNSEETMVDNLFNGVTDKRKEESLATSTDHMESPTTFSSNMDGDLSLWNSLDPICFVS* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01034 388 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Pte18g01034 388 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Pte18g01034 388 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Pte18g01034 388 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 11 295 - -
Pte18g01034 388 CDD AP2 41 97 IPR001471 GO:0003700|GO:0006355
Pte18g01034 388 FunFam ethylene-responsive transcription factor RAP2-11 40 99 - -
Pte18g01034 388 SUPERFAMILY DNA-binding domain 41 98 IPR016177 GO:0003677
Pte18g01034 388 Pfam AP2 domain 41 90 IPR001471 GO:0003700|GO:0006355
Pte18g01034 388 Gene3D AP2/ERF domain 40 98 IPR036955 GO:0003700|GO:0006355
Pte18g01034 388 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Pte18g01034 388 MobiDBLite consensus disorder prediction 213 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01034 Pte-Chr18 22753153 22754319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01034 39 117 AP2-EREBP Transcription Factor Family AT5G19790 72.152 9.91e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte18g01034 AP2 6.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01034 K09286 - qsa:O6P43_004449 452.21