Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte18g01033 | ATGGATGGACAAACTGGCCGGAGTGGTGGAGGTGTTGATATGTTTCTGCCCAATTATAAGTTGGGGAAAACACTCGGAATCGGGTCCTTTGGAAAAGTGAAAATTGCGGAGCATGCACTTACTGGTCACAAAGTTGCCATCAAGATCCTTAACCGTCGCAAGATTAAGAACATGGAAATGGAAGAAAAAGTGAGAAGAGAAATCAAAATATTGAGATTGTTTATGCATCCCCACATCATAAGACTCTACGAGGTCATAGAGACACCGACTGACATTTATGTGGTTATGGAGTATGTCAAGTCTGGAGAGCTCTTTGATTATATAGTGGAGAAGGGAAGGTTGCAAGAAGACGAAGCTCGTAATTTTTTCCAGCAGATTATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTTGTTCATAGAGATCTCAAACCTGAGAATTTGCTTTTAGACTCAAAATGGAATGTGAAGATTGCTGACTTTGGTTTAAGCAATATCATGCGCGATGGTCATTTTCTTAAGACAAGTTGTGGGAGCCCAAACTATGCTGCCCCCGAGGTTATATCTGGAAAATTATATGCTGGCCCCGAAGTCGATGTCTGGAGCTGTGGAGTCATATTGTATGCTCTTCTTTGTGGCACCCTTCCTTTTGATGATGAGAATATCCCAAATCTTTTTAAGAAAATAAAGGGTGGGATTTACACCCTTCCTAGTCATTTATCTCCTGGTGCTAGAGATTTAATTCCAAGGATGCTTGTGGTGGATCCCATGAAGAGAATGACCATACCTGAAATCCGCCAACACCCATGGTTCCAAGTTCATCTACCTCGTTATTTAGCTGTGCCCCCACCTGATACAATGCAGCAAGCAAAGAAGATTGATGAGGAGATTCTTCAGGAAGTGGTCAACATGGGATTTGACAGAAATCCGTTGGTTGAATCTCTCCTAAACAGAATGCAAAATGAGGGTACTGTAGCATACTATTTGTTATTGGATAACAGATTTCGTGTTTCCAGTGGCTACCTTGGTGCTGAATTTCAAGAAACTATGGAATATGGATTTAACCGAATGCATCCTGGTGAAGTTGCTGCTCCAGTTGTTGGCCATCGCCTTCCAGGAGGACATACGGATTATCAAGGAATGGGATTAAGATCCCAGTTTCCAGTTGAAAGAAAATGGGCTCTTGGACTTCAGTCTCAAGCACATCCTCGTGAGATCATGACGGAGGTCCTAAAAGCTTTGCAAGGGTTGAATGTTTGCTGGAAGAAGATTGGTCATTACAATATGAAGTGCAGGTGGGTTCCCGGTTATCATGAAGGAATGATTAACAATGCTGCGCATACCAATCATTACTTCAACGATGATTTCTCCATTATTGAGAACGGTTCTCTTGCCAAATCACCAAATGTGGTCAAGTTTGAAGTGCAGTTATATAAGACCAGGGAGGAGAAGTATCTGCTTGACCTTCAGCGGATCCAGGGTCCACAATTCCTCTTCTTGGACCTTTGTGCTGCATTCCTCTCGCAACTTCGAGTTCTTTAA | 1542 | 0.4261 | MDGQTGRSGGGVDMFLPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKWNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHPWFQVHLPRYLAVPPPDTMQQAKKIDEEILQEVVNMGFDRNPLVESLLNRMQNEGTVAYYLLLDNRFRVSSGYLGAEFQETMEYGFNRMHPGEVAAPVVGHRLPGGHTDYQGMGLRSQFPVERKWALGLQSQAHPREIMTEVLKALQGLNVCWKKIGHYNMKCRWVPGYHEGMINNAAHTNHYFNDDFSIIENGSLAKSPNVVKFEVQLYKTREEKYLLDLQRIQGPQFLFLDLCAAFLSQLRVL* | 514 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte18g01033 | 513 | SUPERFAMILY | KA1-like | 328 | 512 | IPR028375 | - | |
| Pte18g01033 | 513 | SUPERFAMILY | UBA-like | 281 | 330 | IPR009060 | GO:0005515 | |
| Pte18g01033 | 513 | CDD | STKc_AMPK_alpha | 16 | 271 | - | - | |
| Pte18g01033 | 513 | Pfam | Protein kinase domain | 19 | 271 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Pte18g01033 | 513 | PANTHER | SERINE/THREONINE KINASE | 18 | 336 | - | - | |
| Pte18g01033 | 513 | CDD | UBA_SnRK1_plant | 293 | 333 | - | - | |
| Pte18g01033 | 513 | Pfam | UBA/TS-N domain | 293 | 329 | IPR015940 | - | |
| Pte18g01033 | 513 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 292 | 332 | IPR015940 | - | |
| Pte18g01033 | 513 | ProSiteProfiles | Kinase associated domain 1 (KA1) profile. | 464 | 512 | IPR001772 | - | |
| Pte18g01033 | 513 | ProSiteProfiles | Protein kinase domain profile. | 19 | 271 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Pte18g01033 | 513 | Gene3D | Kinase associated domain 1, KA1 | 396 | 511 | - | - | |
| Pte18g01033 | 513 | FunFam | Non-specific serine/threonine protein kinase | 11 | 98 | - | - | |
| Pte18g01033 | 513 | Gene3D | Transferase(Phosphotransferase) domain 1 | 11 | 348 | - | - | |
| Pte18g01033 | 513 | CDD | AMPKA_C | 390 | 510 | - | - | |
| Pte18g01033 | 513 | FunFam | Non-specific serine/threonine protein kinase | 396 | 511 | - | - | |
| Pte18g01033 | 513 | Pfam | Kinase associated domain 1 | 470 | 512 | IPR001772 | - | |
| Pte18g01033 | 513 | FunFam | Non-specific serine/threonine protein kinase | 10 | 349 | - | - | |
| Pte18g01033 | 513 | ProSitePatterns | Protein kinases ATP-binding region signature. | 25 | 48 | IPR017441 | GO:0005524 | |
| Pte18g01033 | 513 | SMART | serkin_6 | 19 | 271 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Pte18g01033 | 513 | SUPERFAMILY | Protein kinase-like (PK-like) | 16 | 287 | IPR011009 | - | |
| Pte18g01033 | 513 | SMART | uba_6 | 294 | 331 | IPR015940 | - | |
| Pte18g01033 | 513 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 138 | 150 | IPR008271 | GO:0004672|GO:0006468 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte18g01033 | Pte-Chr18 | 22745099 | 22752198 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte18g01033 | 19 | 271 | CBL-interacting serine-threonine protein kinases | AT4G24400 | 52.756 | 8.61e-94 | 290 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | CAMK_AMPK | Pte18g01033 | Pkinase | 6.6e-81 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte18g01033 | K07198 | - | qsa:O6P43_009110 | 956.822 |