Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01027 ATGGCGACGTCAAAGCCTCAGAGGTCACTGCAAGAAATTGAAGACATAATTCTTCGAAAAATCTTGCTGGTTTCGCTTACCGATGCCGGTGAAGCTGAGTCTAGAATCATCTACTTAGAGATGACTGCAGCTGAGATTCTGAGCGAAGGTAAGGAGTTGAAGCTGTCAAGGGATTTAATGGAAAGGGTTCTCTTTGATCGTCTTGCTGGGGATTTCCCTTCTGCTGAACCACCGTTTCAATACCTTATCGGTTGCTATCGACGCGCACATGAAGAGGGTAAGAAAATCACAAGCATGAAAGATAAGAATATAAGGTCTGAAATTGAATCGGTTGTCAAACAAGCCAAGAAACTTGCTGTATCTTATTGTCGAACGTACTTGGGAAACCCAGAATTGTTTCCTAGTGGAAAGCTTGATTCTGAGAAACCCAAAGTTTCGCCTTTGTTGCCATTGATTTTCTCTGAAGTCGGCAGTACTATGGATGGCATTGGTGGAAGTACTAGTGGTGGTGGTGGGGTCCAATGCCCTCCTGGGTTTTTGGAGGAGTTCTTTAGGGACTCTGACTTTGATAGTTTGGACCCAATTTTGCAAGGCTTGTATGAAGACTTGAGGAGTAGTGTTTTGAAGGTTTCAGCTCTTGGGAACTTCCAACAGCCTTTAAGGGCATTATTGTATTTGATAAAATTTCCTTGTGGTGCGAAGTCTCTGGTTAACAATCGGTGGTGGTTGCCTAAGGCAGCTTATATGAATGGACGGGTTATGGAGATGACTAGCATTTTAGGCCCTTTCTTTCATGTTAGTCCTCTTCCTGATCATACTATTTTCAGGAGCCAGCCTGATGTGGGGGAGCAGTGCTTTTCTGAAGCATCCACTCGAAGACCAGCTGATCTGTTGTCTTCATTCAGTACGATAAAGACGGTTATGAATATTTTATATGATGGACTAGCAGAAGTGCTCCTCACACTTTTAAAGAATACTGATACTCGTGAAAAAGTCCTAGAGTATCTTGCAGAAGTAATAAATAAAAACTCCTCAAGGGCTCACATCCAGGTTGATCCTATATCATGTGCAAGCTCAGGCATGTTTGTAAATCTCAGTGCCGTTATGCTTCGTCTAAGTGACCCATTTCTAGATGCAAATTTGTCAAAAAGGGATAAAATTGATTCAAAATATGTGCATTACTCTGACCGATTGGAGCTGAGTGGGTTAACTGCTCTTCATGCATCAGCTGAGGAAGTGACTCAATGGATCAACAGAGATGGTCATCTTCAAGCTGCTGATGATGAAAAACGGCTGAAACGATCTCATGAAGCCACCAATTCAGGGCGTGACGATGCTGCTGCCTCATATTCAAAGCCTATGCCAAGTGGTGAAAAATCAAAATATTCATTTATTTGTGAATGCTTCTTTATGACTGCCAGAGTATTGCACTTGGGCTTGTTAAAAGCATTTTCTGACTTTAAACACTTGGTTCAGGACATTTCTAGGTGTGAAGATACTCTTGCCACACTTAAGGCCATGAAAGAGCATTCTCCCTCTTCTCAATTGGATAGTGACATATCTCGTCTTGAGAAAGAAATGGAATCTTACTCACAGGAAAAGCTTTGTTATGAGGCTCAACTTTTGAGGGATTGCACGCTTATCCAGCATGCTCTTTTTTTCTACCGCTTAATGGTAGTTTGGTTAGTTGGTTTGGTTGGTGGATTTAAGATGCCCCTACCATCTTCTTGCCCAATGGAGTTTGCATGCATGCCTGAACATTTTGTCGAAGATGCGATGGAGTTGCTTATTTTTGCTTCCAGGATACCAAAAGCTTTGGATGGTGTTTTGCTGGATGACTTTCTGAACTTCATTATCATGTTTATGGCTAATCCTCAATATATTAAAAACCCATATCTACGGGCAAAGATGGTTGAAGTCTTGAACTGCTGGATGCCACGTAGGAGTGGTTCATCAGGTACTGCTTCTTTATTTGAAGGGCATCCTCTATCACTTCAGTATCTCGTGAGAAACCTTTTGAAGGTTTATGTCGACATTGAGTTTACTGGCTCACACACGCAGTTCTATGACAAGTTTAACATTCGCCACAATATTGCCGAACTTCTGGAGTACTTGTGGCAGGTTCCTAGTCATCGTAATGCATGGAGACAGATTGCTAAGGAAGAGGAAAAGGGTGTCTATCTGAATTTCCTGAATTTTCTGATCAACGATAGCATCTATCTTCTTGATGAAAGTCTGAATAAAATTCTTGAACATAAGGAGTTAGAGCTTGAGATGTCAAATGTGGCAGCATGGGAGCGACGGCCAGCACAGGAGAGGCAGGAGAGGATCCGGCTTTTTCACTCCCAAGAGAATATTATACGGATAGATATGAAGTTGGCTAATGAAGATGTGAGCATGCTTGCATTTACTTCTGAGCAGATCACAGCACCTTTCCTGTTACCTGAGATGGTTGAAAGAGTGGCTAGCATGCTCAATTATTTTCTTTTGCAATTGGTGGGTCCTCAAAGAAAGTCCCTGAGTCTGAAAGATCCAGAGAAGTATGAATTCCGTCCAAAAGAGTTACTCAAGCAGATTGTACACATATATGTTCATCTGGCGAGGGGTGACAGTGAAAATGTTTTCCCAGCTGCCATCTCAAAGGATGGCCGGTCATACAATGAGCAGTTGTTCACTGCTGCAGCAGATGTGCTCCGTAGAATAGGAGAAAATGGGAGAACTATACAGGAGTTTGTTGAGCTTGGCGCTAAAGCTAAAGTCGCGGCTACTGAGGCAATGGATGCTGAAGCCACCCTTGGAGATATACCCGATGAATTCCTTGACCCTATCCAATATACTTTGATGAAGGACCCCGTGATATTACCTTCTTCAAGGATCACAGTTGATCGACCTGTCATCCAGAGGCATCTTCTAAGTGACAACACTGACCCATTCAACCGATCACATCTTACTGTGGATATGCTTATACCTGACACAGAGCTGAAGGCACGGATTGATGAGTTCATTAAATTCCAACAACTGAAGAAACACGGTGAAAGCCTCACCGTGACAAGTAGTAACAAGGACACAATCCGGACCACAAATGGGGATATGTTAATTGGTTAG 3105 0.4264 MATSKPQRSLQEIEDIILRKILLVSLTDAGEAESRIIYLEMTAAEILSEGKELKLSRDLMERVLFDRLAGDFPSAEPPFQYLIGCYRRAHEEGKKITSMKDKNIRSEIESVVKQAKKLAVSYCRTYLGNPELFPSGKLDSEKPKVSPLLPLIFSEVGSTMDGIGGSTSGGGGVQCPPGFLEEFFRDSDFDSLDPILQGLYEDLRSSVLKVSALGNFQQPLRALLYLIKFPCGAKSLVNNRWWLPKAAYMNGRVMEMTSILGPFFHVSPLPDHTIFRSQPDVGEQCFSEASTRRPADLLSSFSTIKTVMNILYDGLAEVLLTLLKNTDTREKVLEYLAEVINKNSSRAHIQVDPISCASSGMFVNLSAVMLRLSDPFLDANLSKRDKIDSKYVHYSDRLELSGLTALHASAEEVTQWINRDGHLQAADDEKRLKRSHEATNSGRDDAAASYSKPMPSGEKSKYSFICECFFMTARVLHLGLLKAFSDFKHLVQDISRCEDTLATLKAMKEHSPSSQLDSDISRLEKEMESYSQEKLCYEAQLLRDCTLIQHALFFYRLMVVWLVGLVGGFKMPLPSSCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFLNFIIMFMANPQYIKNPYLRAKMVEVLNCWMPRRSGSSGTASLFEGHPLSLQYLVRNLLKVYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILEHKELELEMSNVAAWERRPAQERQERIRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKELLKQIVHIYVHLARGDSENVFPAAISKDGRSYNEQLFTAAADVLRRIGENGRTIQEFVELGAKAKVAATEAMDAEATLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDNTDPFNRSHLTVDMLIPDTELKARIDEFIKFQQLKKHGESLTVTSSNKDTIRTTNGDMLIG* 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01027 1034 Pfam Ubiquitin elongating factor core 260 918 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Pte18g01027 1034 SUPERFAMILY RING/U-box 927 1003 - -
Pte18g01027 1034 FunFam Ubiquitin conjugation factor e4 a 934 1012 - -
Pte18g01027 1034 ProSiteProfiles U-box domain profile. 934 1008 IPR003613 GO:0004842|GO:0016567
Pte18g01027 1034 SMART Ubox_2 938 1001 IPR003613 GO:0004842|GO:0016567
Pte18g01027 1034 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 934 1012 IPR013083 -
Pte18g01027 1034 CDD RING-Ubox_UBE4A 937 1003 - -
Pte18g01027 1034 PANTHER UBIQUITINATION FACTOR E4 3 1010 IPR045132 GO:0000151|GO:0030433|GO:0034450
Pte18g01027 1034 MobiDBLite consensus disorder prediction 428 458 - -
Pte18g01027 1034 Pfam U-box domain 935 1004 IPR003613 GO:0004842|GO:0016567
Pte18g01027 1034 Coils Coil 513 540 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01027 1 1033 U-box Gene Family AT5G15400 75.714 0.0 1615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01027 K10597 - zju:107415942 1661.74