Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01016 ATGGAGTATGCCACTCCCACTACCAACTGGGTTCAATATAATGTGCATACTATAAACCCACCTCCTCAAAGCACGTATTCTTCTCACGTTCCTGGTAACCTTGAAATCCCCAACTCTTCTGCCCCTTATTTTTACAACTCAACGGTTGCTGGAGGAACCCATGATTATGCACATAGTATTGAACCAGATCTTAACCGGGATCCATCCAGGGTTGACTCCTCTGTTGCCTTGACCCCACATACTATTGGTTACCCGGGCAGTGAGTCTCAGTCTGTAATTCATTATAACCACCTTCAAATGGGGGATACCCAGTCGTTGCCTGCGGCTTACGGGTATTACTGGGACGTGAATTCTCAGAATTGGACCACGGCACAGACAGTCACGCAATATCAGGCCAACCCAGTTGGATATAGCTTTATGTTATCTGGACATTCTTCACAAGTGCTCTCCATTTCTGCAAATGGGTCAGAACACTTGGGATTTGCAACTCCCAACTCAACAGGGTGGGCAAACCCAAAAGTCCTCTCTCATGGAAAAGAACTACGGTTCAAACGACAGAAGAAAAAAGCTGCTAAAAAGATTGTAGAATCGGCGTTCTGTGAAGTTTGCAAAATTAACTGCAACAGCAAGGATATATTGGTTCAGCATAAACTAGGAAAGAAGCATAAGAAGAAACTGGAAAAATTAAGACAACTGTTAGGTCCTCTCCCAATTGCTGCAACTGTCTCAGGCAATCCTGTCAGTCAACCAATAGAACAAGCAAATATAGATCAGCCTGCTACTGTCTCAACAAACTCTGCCAGTCAACTAATAACTCAAGCCAACATAGGTCAGCCTGCTACTATCTCAAGCAACCCTATCAGTCAATCAATAACTCAAGTACACATAGGTCAACCTGCTGCTGTCTCAAGCAACCCTACCAGTCAACCAGCAGAGCAACCAAATATAAGTCAGCCTGTGAATGTTCGGAAGAAGAAGAAGAAGAAAGCCTCTGGAAACGAAGAGGATTTGGAGAAGAAGAGGAGGAAGGTAATTGAAGGGGGTGCAGCAGCTGAGTCAGTTAGGACATGTACAGTCTGCAACGTGGTATGTAATAGCGACACAGTTTTCAATAGTCATCTCGCTGGGCAGATGCATGCTACTAAAGTGCAAAAACTGGCGTCTCAAAATAAATAG 1176 0.443 MEYATPTTNWVQYNVHTINPPPQSTYSSHVPGNLEIPNSSAPYFYNSTVAGGTHDYAHSIEPDLNRDPSRVDSSVALTPHTIGYPGSESQSVIHYNHLQMGDTQSLPAAYGYYWDVNSQNWTTAQTVTQYQANPVGYSFMLSGHSSQVLSISANGSEHLGFATPNSTGWANPKVLSHGKELRFKRQKKKAAKKIVESAFCEVCKINCNSKDILVQHKLGKKHKKKLEKLRQLLGPLPIAATVSGNPVSQPIEQANIDQPATVSTNSASQLITQANIGQPATISSNPISQSITQVHIGQPAAVSSNPTSQPAEQPNISQPVNVRKKKKKKASGNEEDLEKKRRKVIEGGAAAESVRTCTVCNVVCNSDTVFNSHLAGQMHATKVQKLASQNK* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01016 391 SMART ZnF_U1_5 195 229 IPR003604 GO:0003676|GO:0008270
Pte18g01016 391 SMART ZnF_U1_5 352 386 IPR003604 GO:0003676|GO:0008270
Pte18g01016 391 Gene3D Classic Zinc Finger 183 234 - -
Pte18g01016 391 Pfam Zinc-finger of C2H2 type 356 379 - -
Pte18g01016 391 Pfam Zinc-finger of C2H2 type 199 222 - -
Pte18g01016 391 SMART c2h2final6 355 379 IPR013087 -
Pte18g01016 391 SMART c2h2final6 198 222 IPR013087 -
Pte18g01016 391 MobiDBLite consensus disorder prediction 297 340 - -
Pte18g01016 391 SUPERFAMILY beta-beta-alpha zinc fingers 352 386 IPR036236 -
Pte18g01016 391 Gene3D Classic Zinc Finger 321 386 - -
Pte18g01016 391 PANTHER ZINC FINGER PROTEIN 385B-LIKE 117 390 - -
Pte18g01016 391 MobiDBLite consensus disorder prediction 297 320 - -
Pte18g01016 391 SUPERFAMILY beta-beta-alpha zinc fingers 189 231 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01016 194 389 C2H2 Transcription Factor Family AT5G61190 23.913 2.94e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01016 - - ccav:112516556 140.584