Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01015 ATGGAGCAGGATCAAGAACAGAGGCATGTGTGCAGGCGGTGCAGCAAGAGTTTTCTGAGTGGAAGAGTCTTGGGAGGTCATATGAGGTGCCATATGAAACAGAAAACAGCGAAAGCTGACCTCGAAGTCTGCACGACGAAAATGATCGTCAAAGCTGACGGGGAAAATGGGTATGCTCTGAGAGAAAATCCGACAAAGTCTTGGAAGTCTAAGGATGATGATGCGAATCCAGCACAGGAAAATCAGTGCAAAATTTGTGGAAAACGATTTGAATCGATGAGAGCTCTGTTTGGACACATGAGACATCATTCAAAGAAACGCAAGAAGGGAGTTTCCTGTAAAGAATGTGGGGAGAATTTTCAGTCTTTGAAAGCTCTTGCTGCTCATATTGGATGCCACTCTGAAGAGCATAAGGTTTCTGATAAATCAGAGCCTAGTCGACGTCCAAAGCCTATTACAGAGAGCTTATCAGACTGTGAAAACCTGAGTAGTGTTGTGCGCAGAAAGAGGTCAAAAAGAACATGGTATGCTAATGGTCAAAGCTCTTCCTTATGTCCATTGAATGAATCTTCATCTCTCGTTAAATCTGAGCAAGAAATTGAAGAGGTAGCTCTGAGCTTGATGATGCTGTCTAGAGGCGTGCGAGATTTTGATGGAACTGCTGCAGCTACCGAGTCTTCTGAGAATAACTCTGTGATCTTTGAGGTGAAATCATCAGGTCAAACTACGAAATTTGTGCACAACGAGGCTGTAAGTTTTGTTTTTGATCGAAGTGGATCTATGAAGATTGAAGCAATTGAAACCAAGAAGGTTAGTTCTGTTTTTGGAGACTCGCAGATTGTTTCTGATGATAGTAATTCTAAACTTTTGTTGAAGCCCAGTGCAGTCGACAATACTCAGCTTTATGATAAGCAGACTGTTAAGGAACCAGCGGAATTTTGTTTAAGGAAGAAAGCCAAGCTTGAAGCTTGTTTGGCTCAATCAAAGGAAAATTCCAGCTACAAGATAAATGCTACTTCTGATTCTTGTAACATAGATGATTCTCAAAGTAAAAGTGAATTACAGTGCAAGACTTGCAACAGCCTTTTCTTTTCTCCTCAGGCTCTTCATGGCCACCAAATAATTCACAGAACTTCAGAGTTATTAGAACGGAAGGTTGACGACTGTAAAAGAAGTATTCAGACTGAAAATTTAACAGTTATCGAGAAACTTGAGCTTACTGAATCTCCCTGTGATCAGGGAATGGGAGGAATTACTATGACAGAAGAGGAGCCAAGGGGAACGAGGCAGCACAAATGCTCTGTATGTCTGAAGGTCTTTGCAACAGGCCAAGCTTTGGGTGGTCATAAGAGGGCACACATAGCGAAAAACTCTCAGTTCAGTGAAGAAGAGGCCATGCTGCTAGAGCAAGAGACATCAGAAACCTCCGATGAGTTTGGTTTTGACATTCCAGCTATACTCAAAGAAGACACTGAAGGTGATTTGCCAATCAGCTCATGGTGGGTGGGATGCGAGCAAAAGCATGAGTTGATGGTAGTGTAA 1542 0.4235 MEQDQEQRHVCRRCSKSFLSGRVLGGHMRCHMKQKTAKADLEVCTTKMIVKADGENGYALRENPTKSWKSKDDDANPAQENQCKICGKRFESMRALFGHMRHHSKKRKKGVSCKECGENFQSLKALAAHIGCHSEEHKVSDKSEPSRRPKPITESLSDCENLSSVVRRKRSKRTWYANGQSSSLCPLNESSSLVKSEQEIEEVALSLMMLSRGVRDFDGTAAATESSENNSVIFEVKSSGQTTKFVHNEAVSFVFDRSGSMKIEAIETKKVSSVFGDSQIVSDDSNSKLLLKPSAVDNTQLYDKQTVKEPAEFCLRKKAKLEACLAQSKENSSYKINATSDSCNIDDSQSKSELQCKTCNSLFFSPQALHGHQIIHRTSELLERKVDDCKRSIQTENLTVIEKLELTESPCDQGMGGITMTEEEPRGTRQHKCSVCLKVFATGQALGGHKRAHIAKNSQFSEEEAMLLEQETSETSDEFGFDIPAILKEDTEGDLPISSWWVGCEQKHELMVV* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01015 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Pte18g01015 513 ProSitePatterns Zinc finger C2H2 type domain signature. 433 453 IPR013087 -
Pte18g01015 513 SUPERFAMILY beta-beta-alpha zinc fingers 6 36 IPR036236 -
Pte18g01015 513 SUPERFAMILY beta-beta-alpha zinc fingers 355 453 IPR036236 -
Pte18g01015 513 SUPERFAMILY beta-beta-alpha zinc fingers 82 133 IPR036236 -
Pte18g01015 513 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Pte18g01015 513 MobiDBLite consensus disorder prediction 135 155 - -
Pte18g01015 513 Gene3D Classic Zinc Finger 352 453 - -
Pte18g01015 513 Pfam C2H2-type zinc finger 113 134 - -
Pte18g01015 513 Pfam C2H2-type zinc finger 431 453 - -
Pte18g01015 513 Pfam C2H2-type zinc finger 83 105 - -
Pte18g01015 513 Pfam C2H2-type zinc finger 8 34 - -
Pte18g01015 513 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Pte18g01015 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Pte18g01015 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 431 458 IPR013087 -
Pte18g01015 513 SMART c2h2final6 111 133 IPR013087 -
Pte18g01015 513 SMART c2h2final6 431 453 IPR013087 -
Pte18g01015 513 SMART c2h2final6 81 103 IPR013087 -
Pte18g01015 513 SMART c2h2final6 354 376 IPR013087 -
Pte18g01015 513 SMART c2h2final6 9 31 IPR013087 -
Pte18g01015 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Pte18g01015 513 Gene3D Classic Zinc Finger 58 138 - -
Pte18g01015 513 ProSitePatterns Zinc finger C2H2 type domain signature. 356 376 IPR013087 -
Pte18g01015 513 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Pte18g01015 513 MobiDBLite consensus disorder prediction 135 154 - -
Pte18g01015 513 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 111 490 - -
Pte18g01015 513 MobiDBLite consensus disorder prediction 60 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01015 Pte-Chr18 22595293 22597121 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01015 428 489 C2H2 Transcription Factor Family AT1G26610 33.333 1.99e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte18g01015 zf-C2H2_6 1.7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01015 - - jre:108987965 390.578