Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01000 ATGTGGGGTTCAGAAATGGGTTGTTCACCTTTTTTTCCGTCAGTGGTCAAATGGCAGTCTTTTCATAGTTTCATGTCGTACACACTTGTAATACTGAAGCTGATGCTTTTGTGTTGTGCTATATCTTCTGTAAACGTGTCTTTAGCTGATTCGGACAAATCGGTGCTGCTTCAGTTTAAGAACTCAGTCTCAGACCCAGTGGGGCTACTCGCAAGTTGGAATCCTGCTGATCACAATCACTGTTCTTGGTTTGGTGTCTTATGTGATTCGCGTGATCTGGTTGTTTCGCTTAACATTACTGGAAATGGAAGAGAAGGTACGTCGAATGCTTTTTCTTGTTATGATTACGCTCAATTCCCTCTGTACGGGATTGGAATTAGAAGGAGTTGTGAAGGTGCCAAGGGTTATTTGGCTGGGAAATTACCAAGTGTGATCAGTGAGCTTAGCGAACTGAGAATTTTATCACTTCCATTTAACGGTTTTGAGAGTGAAATTCCTAATGAAATATGGGGTATGGACAAGTTGGAAGTTCTCGATCTAGAAGGTAATTTGGTAGCTGGAGCCCTCCCTTTTCAGTTTCGAGGGTTGAAGAACTTGAGAATCCTCAATCTTGGGTTTAACAGACTTGCTGGGGAGGTGCCAAGCTCATTATCAAGTTTTGACAACTTAGAAATCTTGAATTTGGCTGGGAACGGTCTAAATGGTTCTGTCCCTGGGTTTGTGGGGAAACTAAGACAGGTGTATTTATTGTTTAATTCTCTCAGTGGGGAAATTCCAAGTAATATAGGGGAGGATTGTGATAAGCTTGAGCACCTAGATTTGTCCGGTAACTTCCTAGCCCATGGAATTCCTAGCAGTCTGGGAAATTGTAGGCAGTTGAGAACACTTCTATTGCATGAGAATATGTTGGAAGAGGCTATTCCAGCTGAGCTTGGTCTTCTTCAGAATCTTCAAGTTTTGGATGTTTCAAGGAATAGTCTCAGTGGTTCAATCCCGAAAAGGCTTGGAAATTGTTCTGAATTATCCGTGCTCGTGCTGTCAAATTTATTTCATCCTCTTCCAGTGCTCAATAAGTCAATAAGGAACCCTTCTCAGGTGCAATTGGATTTATGGGATGATGAACTGAATTACTATGAAGGTGGAATCCCCAAAGAAGTTACAATGCTTCCAAAACTCAGAATATTATGGGCACCAAGAGCAACTCTTGAGGGCAGTCTCCCCAGATATTGGAATGCTTGTGACAACCTAGAAATGATCAATTTGTCTCAGAATTATTTCAAAGGGGATTTCCCTATTGAGCTGAATCAGTGTAAGAAACTGCAGTTTGTGGATTTGAGCTCCAACCACCTGACTGGGCGGCTCCATGAGGGGCTCCTGGTGCCCTGTATGACTGTGTTTGATGTCAGTGGGAACTCCTTTTCTGGTTCAATTCCCAAATTCACCAACTACTCTTGCTCTCCTGTTCCGTCTTGGAATACTAATATTTTTGAAGGTGATAACCCTTCTGCTGTATACAGATCATTCTTTATGTCCACTTTTCAGCTTGGAACCCCTTTTCACATGATTGGAGATGGGAGTGGTCTTTCAGTTTTTCACAACTTTGGCCGCAATAACTTAACAGGCATCATCCAGTCAATTCCAATTGCACCTGAGAGATTAGGGAAGCAAACTGTCTATGCATTTGTTCTTGGAGAAAACAAGCTTATAGGATCATTTCCTGGTATTTTATTTGAAAAGTGTGATAGATTGGATGGACTCATTGTTAATGTCAGTAATAACAGGTTATCTGGTGGGATCCCAGATAGGCTGGATCTGATATGCAGATCTCTAAAGTACTTGGATTTATCTGGGAATCAAATCAATGGATCAATTCCTCCTGATCTGGGAGCATTAATGTCCCTTGTCGGTCTAAACTTAAGTTGGAATCAGTTGCAAGGTCCAATTCCAGCCGGTCTTGGTCTGATTAAGGATCTAAAGTTTCTTTCTTTGGCTGGCAATAACTTGACTAGTATTATTCCATCCAATTTAGGTCAATTGTACTCTTTAGAAGTTCTTGACCTTTCTTCAAACTCTCTTTCTGGTGAGATTCCAAAGGTTCTTATGAATCTAAGGAGCCTGAGAACGCTTCTGCTCAGTAACAACAAATTAACTGGGGCAATTCCTGCGGCTTTGGCAAATGTGACCACTCTTTCATCATTCAATGTGTCTTTCAATAACTTATCTGGATCACTTCCTTTAAATAGTAACTTGATGAAATGCAACAGTGCTATTGGCAACCCACGTGTTCAGTCTTGCCGTATGTTTTCTCTGAGAGCACCATCTTCAGATCCTCAAGGGAGTACTGGAGCATTAACTTCCTATAGTGCTGCACCTCCAGAGGATGGCCGCAATCAGCACAGAAATGGCTTCAGTTCAATCGAGATCGCATCTATAACATCTGCATCAGCCATAGTTTCTGTTCTTCTGGCCTTGATTGTTCTATTCTTCTATACAAGGAAGTGGAATTCCAGATCTCGGGTTGGTGGATCTACAAGAAAGGAAGTAACTGTCTTTACTGAGATTGGTGTTTCATTAAACTATGATACTGTCGTGCGTGCCACGGGAAGTTTCAATGCCAGTAACTGCATCGGGAGTGGAGGATTTGGGGCAACATATAAGGCAGAGATTGCACCAGGGATCTTGGTGGCAATCAAACGGCTTGCAGTTGGACGGTTCCAAGGGGTTCAACAATTCCACGCTGAAATCAAAACCCTAGGAAGGCTTCATCATCCAAATTTAGTCACTTTAATCGGTTATCATGCTAGTGAAATGGAAATGTTCCTCATATACAACTACCTGCCCGGTGGTAATCTTGAGAAGTTCATACATGAAAGATCAAAGAGGGCTGTCGACTGGAGGGTTCTTCACAAGATTGCACTAGACATAGCCCGCGCCCTTGCATACCTTCATGATCAGTGTGTGCCACGTATTCTGCATCGAGATGTGAAGCCAAGCAATATCTTACTTGATGACGATTTCAATGCTTATCTGTCTGACTTTGGGTTGGCCAGGCTTTTAGGAACTTCAGAAACACATGCTACCACCGGGGTGGCTGGAACTTTTGGATATGTTGCTCCTGAATACGCGATGACTTGCCGTGTTTCTGATAAAGCTGATGTGTATAGTTATGGCGTGGTACTCTTAGAGCTACTGTCTGACAAGAAAGCATTGGATCCTTCATTTTCGTCGTTTGGAAATGGTTTCAACATTGTTGCATGGGCATGCCTGCTCCTTCGGCAGGGTCGCGCCAAAGAGTTTTTCACAGCAGGACTCTGGGATGCTGGCCCCCACGATGATTTGGTGGAAGTGTTGCACTTAGCTGTTGTGTGCACAGTAGACTCTCTCTCAACTAGGCCTACCATGAAACAGGTTGTGAGACGGCTCAAGCAGCTTCAACCGCCATCATGCTAG 3450 0.4301 MWGSEMGCSPFFPSVVKWQSFHSFMSYTLVILKLMLLCCAISSVNVSLADSDKSVLLQFKNSVSDPVGLLASWNPADHNHCSWFGVLCDSRDLVVSLNITGNGREGTSNAFSCYDYAQFPLYGIGIRRSCEGAKGYLAGKLPSVISELSELRILSLPFNGFESEIPNEIWGMDKLEVLDLEGNLVAGALPFQFRGLKNLRILNLGFNRLAGEVPSSLSSFDNLEILNLAGNGLNGSVPGFVGKLRQVYLLFNSLSGEIPSNIGEDCDKLEHLDLSGNFLAHGIPSSLGNCRQLRTLLLHENMLEEAIPAELGLLQNLQVLDVSRNSLSGSIPKRLGNCSELSVLVLSNLFHPLPVLNKSIRNPSQVQLDLWDDELNYYEGGIPKEVTMLPKLRILWAPRATLEGSLPRYWNACDNLEMINLSQNYFKGDFPIELNQCKKLQFVDLSSNHLTGRLHEGLLVPCMTVFDVSGNSFSGSIPKFTNYSCSPVPSWNTNIFEGDNPSAVYRSFFMSTFQLGTPFHMIGDGSGLSVFHNFGRNNLTGIIQSIPIAPERLGKQTVYAFVLGENKLIGSFPGILFEKCDRLDGLIVNVSNNRLSGGIPDRLDLICRSLKYLDLSGNQINGSIPPDLGALMSLVGLNLSWNQLQGPIPAGLGLIKDLKFLSLAGNNLTSIIPSNLGQLYSLEVLDLSSNSLSGEIPKVLMNLRSLRTLLLSNNKLTGAIPAALANVTTLSSFNVSFNNLSGSLPLNSNLMKCNSAIGNPRVQSCRMFSLRAPSSDPQGSTGALTSYSAAPPEDGRNQHRNGFSSIEIASITSASAIVSVLLALIVLFFYTRKWNSRSRVGGSTRKEVTVFTEIGVSLNYDTVVRATGSFNASNCIGSGGFGATYKAEIAPGILVAIKRLAVGRFQGVQQFHAEIKTLGRLHHPNLVTLIGYHASEMEMFLIYNYLPGGNLEKFIHERSKRAVDWRVLHKIALDIARALAYLHDQCVPRILHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSFGNGFNIVAWACLLLRQGRAKEFFTAGLWDAGPHDDLVEVLHLAVVCTVDSLSTRPTMKQVVRRLKQLQPPSC* 1150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01000 1149 ProSitePatterns Serine/Threonine protein kinases active-site signature. 990 1002 IPR008271 GO:0004672|GO:0006468
Pte18g01000 1149 Gene3D Ribonuclease Inhibitor 537 771 IPR032675 -
Pte18g01000 1149 Gene3D Ribonuclease Inhibitor 243 350 IPR032675 -
Pte18g01000 1149 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 527 770 - -
Pte18g01000 1149 Pfam Protein kinase domain 873 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte18g01000 1149 PRINTS Leucine-rich repeat signature 610 623 - -
Pte18g01000 1149 PRINTS Leucine-rich repeat signature 679 692 - -
Pte18g01000 1149 MobiDBLite consensus disorder prediction 771 787 - -
Pte18g01000 1149 ProSiteProfiles Protein kinase domain profile. 870 1144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte18g01000 1149 Gene3D Ribonuclease Inhibitor 351 497 IPR032675 -
Pte18g01000 1149 SMART LRR_typ_2 196 220 IPR003591 -
Pte18g01000 1149 SMART LRR_typ_2 314 338 IPR003591 -
Pte18g01000 1149 SMART LRR_typ_2 679 702 IPR003591 -
Pte18g01000 1149 SMART LRR_typ_2 703 726 IPR003591 -
Pte18g01000 1149 SMART LRR_typ_2 266 290 IPR003591 -
Pte18g01000 1149 SMART LRR_typ_2 148 172 IPR003591 -
Pte18g01000 1149 SMART LRR_typ_2 607 631 IPR003591 -
Pte18g01000 1149 Pfam Leucine Rich Repeat 268 290 IPR001611 GO:0005515
Pte18g01000 1149 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 946 1148 - -
Pte18g01000 1149 SUPERFAMILY Protein kinase-like (PK-like) 853 1141 IPR011009 -
Pte18g01000 1149 Gene3D Ribonuclease Inhibitor 49 242 IPR032675 -
Pte18g01000 1149 SUPERFAMILY L domain-like 51 351 - -
Pte18g01000 1149 Pfam Leucine rich repeat N-terminal domain 49 89 IPR013210 -
Pte18g01000 1149 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 359 454 - -
Pte18g01000 1149 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 358 1143 - -
Pte18g01000 1149 SUPERFAMILY L domain-like 381 747 - -
Pte18g01000 1149 MobiDBLite consensus disorder prediction 771 798 - -
Pte18g01000 1149 ProSiteProfiles Leucine-rich repeat profile. 609 631 IPR001611 GO:0005515
Pte18g01000 1149 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 834 945 - -
Pte18g01000 1149 Gene3D Phosphorylase Kinase; domain 1 831 945 - -
Pte18g01000 1149 CDD STKc_IRAK 876 1144 - -
Pte18g01000 1149 Pfam Leucine Rich repeat 607 622 IPR001611 GO:0005515
Pte18g01000 1149 ProSitePatterns Protein kinases ATP-binding region signature. 876 898 IPR017441 GO:0005524
Pte18g01000 1149 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 259 350 - -
Pte18g01000 1149 SMART serkin_6 870 1148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte18g01000 1149 Pfam Leucine rich repeat 658 716 IPR001611 GO:0005515
Pte18g01000 1149 Gene3D Transferase(Phosphotransferase) domain 1 946 1146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01000 Pte-Chr18 22468850 22472599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01000 30 1150 Receptor kinase-like Gene Family AT3G02130 64.851 0.0 1385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Pte18g01000 Pkinase 6.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01000 - - qsa:O6P43_009155 1598.95