Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00988 ATGGGAAGGGGAAGAGTAGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAGGTTACTTTTGCAAAGAGGAGAAATGGTTTGCTCAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCTAACCGTGGCAAGCTTTATGAGTTCTGCAGCAGCCCTAGCATGCTCAAAACGTTGGAAAGATACCAGAAGTGCAGCTATGGCGCAGTTGAAGTCAACAAACCTGCCAAAGAGCTTGAGCAGACAAGCTACCGTGAGTACATCAAGCTGAAAACAAGGTTTGAGTCTCTTCAAAGAACCCAAAGAAACCTTCTTGGAGAAGAATTGGGTCCACTGAACACAAAGGAGCTTGAGCAGCTAGAGCGTCAACTGGAGTCATCCCTAAAGCAAGTGAGATCGACAAAGACTCAGTTCATGCTGGACCAGCTTGCTGACCTTCAGAATAAGGAACAACTGTTAGTAGAAGCCAACAGAGCTTTGAGTATAAAGCTTGATGAGATTAATTCAAGGCATCACCTTCGTCAATCGTGGGAAGCCGGTGAACAAAGCATGTCATTTGGTCAACAGATTGCACAGACGCAAGGCTTCAGCTTCCAGTCTTTAGACTGCAATCCAACATTGCAAATAGGGTACAATTCTGTGGCATCAGATCAGATGACCCCAACAACTCATGTCCAGCAAGTGAGTGGCTTTATACCCGGATGGATGCTTTAA 738 0.4512 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSMLKTLERYQKCSYGAVEVNKPAKELEQTSYREYIKLKTRFESLQRTQRNLLGEELGPLNTKELEQLERQLESSLKQVRSTKTQFMLDQLADLQNKEQLLVEANRALSIKLDEINSRHHLRQSWEAGEQSMSFGQQIAQTQGFSFQSLDCNPTLQIGYNSVASDQMTPTTHVQQVSGFIPGWML* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00988 245 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Pte18g00988 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 179 - -
Pte18g00988 245 Coils Coil 122 145 - -
Pte18g00988 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte18g00988 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte18g00988 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte18g00988 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte18g00988 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte18g00988 245 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte18g00988 245 FunFam MADS-box transcription factor 1 13 89 - -
Pte18g00988 245 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte18g00988 245 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Pte18g00988 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte18g00988 245 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Pte18g00988 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00988 Pte-Chr18 22345213 22349908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00988 1 246 MADS-box Gene Family AT5G15800 70.566 1.08e-117 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte18g00988 K-box 1.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00988 K09264 - qsa:O6P43_009196 407.912