Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00986 ATGGGAAGAGGTAGGGTTCAGCTGAAGCGGATCGAGAATAAGATCAGTCGGCAAGTGACGTTCTCTAAACGCCGTACTGGGTTGCTAAAGAAAGCTCACGAAATCTCTGTGCTGTGTGATGCTCAGGTCGCACTAATTGTCTTCTCTACTAAAGGAAAGCTCTTTGAGTACTCCTCTGATTCCAGTATGGAGAGTATCTTGGAACGATACGAGAGATATGCACATGCTGAGCAACAACTTGCTCAGGCTGCAGATGACGGACCTCTGGGAAATTGGTCGCAGGCTTTCCCCAAGCTACTCGCTAGAATTGAAGTTCTGCAAAGAAACATGAGGAACTATGTGGGAGAAGAGCTTGATTCAATGAGTTTGAGAGAACTTCAACATTTGGAGCAGCAACTGGATGCAGCTCTAAAGCGTATTCGCACTCGAAAGAACCAACTGATGCAAGAATCAATTGTGGAGTTGCAGAAGAAGGCCAAGGCACTGCAGGATCAAAACAACATCCTATCAAAGAAGGTAAAATCTCGCTTTCATAAACTGAACATTAACATACTGTGCATGCACGCACTTGTGCGTAACTATGATCATCCAATGCAGACGAAGGAGAAAGAAAAGACAAGGATTGAACGCGCAGACAAGGAGCTGTCCCAACCACAACAGCTAGCTCTAGCTATCGGTGAGAATTTTCACGCCAGAGGATCAGTTGACGATAAAGTGGTTGACAATCAAATTCGTTCAAGAGCCAAAAATCCCATGCCATCGTGGTTACTTCACCACATGAACGATTATGGCGAACCACTTTGA 804 0.4515 MGRGRVQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDAQVALIVFSTKGKLFEYSSDSSMESILERYERYAHAEQQLAQAADDGPLGNWSQAFPKLLARIEVLQRNMRNYVGEELDSMSLRELQHLEQQLDAALKRIRTRKNQLMQESIVELQKKAKALQDQNNILSKKVKSRFHKLNINILCMHALVRNYDHPMQTKEKEKTRIERADKELSQPQQLALAIGENFHARGSVDDKVVDNQIRSRAKNPMPSWLLHHMNDYGEPL* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00986 267 ProSiteProfiles K-box domain profile. 89 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte18g00986 267 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte18g00986 267 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte18g00986 267 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte18g00986 267 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Pte18g00986 267 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Pte18g00986 267 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Pte18g00986 267 Coils Coil 123 172 - -
Pte18g00986 267 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte18g00986 267 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte18g00986 267 Pfam K-box region 91 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte18g00986 267 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Pte18g00986 267 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte18g00986 267 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte18g00986 267 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00986 Pte-Chr18 22310288 22316266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00986 1 219 MADS-box Gene Family AT1G26310 55.909 2.18e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte18g00986 K-box 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00986 K09264 - jre:108988111 281.182