Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00984 ATGGGCTCCGTTTGTTGCTGCTTGAGTGTTAATGAGTTTGAAGATTACATGAATCCAAATAGTTCTGTATATAGTAACTGTATGTGCCTCGGTAGTTTTGTACAGAACTTCTTGAATATGTATTCATCACTATTTCGTAGAGGAGAAGTGCATTCCCTCCCTTCATCTATCCCGGGGGCAGCATCTGTGAATTCTACTGCATCACTTGATAATTCTCTATCTGACATGTATCGTTCTCCTCCAAGGCCCTTGCCTTATGATGCTGACCCTAGGTATTTCTGTTTGCAACGTGATGGACTTGTTTCTAGATGTGAGAAGGGTTCAAGTCATTCTAATGAGGAATCAGAACCTCTTAGAAGTGATGTTGATGCAGAACCAGACCCTCTTAATCCAAGGGACAAATGGAATAGGTCTGCTTGTCAAGATGGATCAAAGGAATACCATTCAAAGACACCCATGAAAGTTTCTTCAACAATATATACAGCAGAAGTTGCACAAATCTATGCATCATCAGAAGATGAAGATGTTTGTCCAACTTGTCTAGATGAATATACTCCAGAGAACCCCAAGATATTGACAAAATGCTCTCACCATTTTCATCTTGGTTGTATATATGAGTGGATGGAAAGAAGTGAAAACTGTCCAGTTTGTGGAAAGGTGATGGTTTTCGATGAAACGAGCTAG 684 0.4006 MGSVCCCLSVNEFEDYMNPNSSVYSNCMCLGSFVQNFLNMYSSLFRRGEVHSLPSSIPGAASVNSTASLDNSLSDMYRSPPRPLPYDADPRYFCLQRDGLVSRCEKGSSHSNEESEPLRSDVDAEPDPLNPRDKWNRSACQDGSKEYHSKTPMKVSSTIYTAEVAQIYASSEDEDVCPTCLDEYTPENPKILTKCSHHFHLGCIYEWMERSENCPVCGKVMVFDETS* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00984 227 CDD RING-H2_AIRP1-like 173 221 - -
Pte18g00984 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 61 225 - -
Pte18g00984 227 MobiDBLite consensus disorder prediction 104 149 - -
Pte18g00984 227 SMART ring_2 177 217 IPR001841 -
Pte18g00984 227 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Pte18g00984 227 Pfam RING-H2 zinc finger domain 174 217 IPR024766 GO:0008270
Pte18g00984 227 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 224 - -
Pte18g00984 227 SUPERFAMILY RING/U-box 171 223 - -
Pte18g00984 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 224 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00984 Pte-Chr18 22302473 22306518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00984 1 225 C3H Transcription Factor Family AT5G38895 56.195 7.54e-90 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00984 - - gmx:100777068 380.178