Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00982 ATGGCAAGGTCAAGGGAAAATCATCAAGGAGAACAAGAAGATGGTGAACACCTTACTGGAAATGGAGATGGAAATGGCTCCACTTCTTCAAATCACAATGTAAAGGTGGGTGAAGAAGCCGACGGACTGGAGAAAACAAACGGTTATCGCTCTAAGCATTCAGAGACTGAGCAAAGGAGAAGAAGCAAAATCAATGAAAGATTTCAGGTCCTGAGAGATCTCATTCCGCAAAATGATCAGAAAAGAGATAAGGCTTCACTCTTGATGGAGGTTATAGAATACATTCATTTTTTACAAGAGAAGTTATATATGTATGAAGGTTCTCACCAGGGATGGAGACAGGAGCCAACAAAGCTGATTCCATGGAGATGTTATCGTGGGCCTGCTGAAAATACTGTAGACCTGTCTCAAATTGCCCATAATGGTTCCTCTCTTGAGAATCATGGATACCCAGTTTTGTTTGAAAGTGTACAGAATCCATTGGAATCTACCTTGTTCACTGCTGCAGTTGAAAAAGTGGAGTCTCCTTTATCAGCCACTGAAGCAGTTTCGTTAAACACGCATATGCAATCGAATATTTTTGATGTACTCATGAGGAGTAGCCTGCCTGCTGACCATTTGCAGGAACCTTCGTCAAATATCAGCTGCATGCCTTCCCTATCCCAGTTATTGCTCAATAGACCAAATGTAAATGATTCTGCTCCTTCAAATGGCACATCAAAGGATGATGACTTTGCAACACCTGTCCCCATTGAAAGTGGAGCTGGTAGCATGTCAAGTGCGTACTCTCAAGTAGTATTGGATACACTTGCGCAGGTACTGCAATCATCTGGTGTAGATTTGTCGGACACAAGAATTTCTGTACAATTGGATATTGAGCAAGGAGCAAAAACATGTTCTGATACATCCAGGTCGAAGATACATGGAAATCAGTCATTTGGGGGTCAAACAATACCTTGCGTTGGAGTTCATAATACGGGGGAGGATTCTGAACCAGCTGTCAAGAAGTTGAGAAGATAA 1020 0.4206 MARSRENHQGEQEDGEHLTGNGDGNGSTSSNHNVKVGEEADGLEKTNGYRSKHSETEQRRRSKINERFQVLRDLIPQNDQKRDKASLLMEVIEYIHFLQEKLYMYEGSHQGWRQEPTKLIPWRCYRGPAENTVDLSQIAHNGSSLENHGYPVLFESVQNPLESTLFTAAVEKVESPLSATEAVSLNTHMQSNIFDVLMRSSLPADHLQEPSSNISCMPSLSQLLLNRPNVNDSAPSNGTSKDDDFATPVPIESGAGSMSSAYSQVVLDTLAQVLQSSGVDLSDTRISVQLDIEQGAKTCSDTSRSKIHGNQSFGGQTIPCVGVHNTGEDSEPAVKKLRR* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00982 339 MobiDBLite consensus disorder prediction 37 63 - -
Pte18g00982 339 Pfam Helix-loop-helix DNA-binding domain 50 99 IPR011598 GO:0046983
Pte18g00982 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 98 IPR011598 GO:0046983
Pte18g00982 339 CDD bHLH_AtBIM_like 47 123 - -
Pte18g00982 339 MobiDBLite consensus disorder prediction 21 35 - -
Pte18g00982 339 MobiDBLite consensus disorder prediction 226 243 - -
Pte18g00982 339 Gene3D - 46 119 IPR036638 GO:0046983
Pte18g00982 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 124 IPR036638 GO:0046983
Pte18g00982 339 MobiDBLite consensus disorder prediction 1 63 - -
Pte18g00982 339 MobiDBLite consensus disorder prediction 226 249 - -
Pte18g00982 339 MobiDBLite consensus disorder prediction 1 18 - -
Pte18g00982 339 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 4 338 IPR044295 GO:0003700|GO:0006351|GO:0046983
Pte18g00982 339 SMART finulus 54 104 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00982 Pte-Chr18 22281836 22286441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00982 3 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 36.913 1.16e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte18g00982 HLH 5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00982 - - qsa:O6P43_009208 320.857