Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00980 ATGGATCCTGAATACATAGCCACAAACAAATTCACAGTAAAGAGTGACATATACAGTTTCGGAATTGTGATTTGCCATTCATCCGCGGAACTTGATGGAGTATATCAACCTTATGAGATCCTTGAAAAGAATCTTATGGGAAAATGTATTATTGAGAGAGTAAGGATGTTGGCCAAAGTTGCATATAGATGCTTGAACAAATCTTATGCTGAAGTGTCACATGCCATCCTGAAGATGAAACCAAGGCACCTTGTCCTGCAAGACACCATGTCAATTGCAAGCCGTGATTTTTCTTGA 297 0.3906 MDPEYIATNKFTVKSDIYSFGIVICHSSAELDGVYQPYEILEKNLMGKCIIERVRMLAKVAYRCLNKSYAEVSHAILKMKPRHLVLQDTMSIASRDFS* 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00980 98 SUPERFAMILY Protein kinase-like (PK-like) 1 69 IPR011009 -
Pte18g00980 98 Gene3D Transferase(Phosphotransferase) domain 1 1 82 - -
Pte18g00980 98 Pfam Protein tyrosine and serine/threonine kinase 1 56 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00980 Pte-Chr18 22276081 22276711 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00980 1 67 Receptor kinase-like Gene Family AT1G16150 31.818 1.14e-08 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Pte18g00980 PK_Tyr_Ser-Thr 3.9e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00980 - - cave:132183159 95.9005