Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00930 ATGCTTTCCGGGGATATACCTCCGAATCAGACCATATACATTAAGAACTTAAACGAGAAGATCAAGAAAGAAGAATTGAAGAGAGGACTTTATTGTTTATTTTCGCAATATGGAAGAATTTTGGATGTTGTTGCTCTGAAGACACCCAAGCTTCGAGGGCAAGCATGGGTTTGCTTCACAGAAGTGCCTGCAGCAAGCAATGCAGTCCGGCAGATGCAAAACTTCCCCTTTTATGATAAGCCTATGCGGATACAATATGCAAAATCAAAGTCGGATTGTATTGCTAAAGAAGAGGGAAGCTACGTCCCAAGAGAAAAGAAAAAGAAGCAAGAGGAAAAAGCTGAAAGAAAAAGGCGTTTTGAGGAAACCCATCAAAATATGCCTAGCGCAGCTACTGGCGGAACTAATGTTGGAGCAAATGCCTCCGCTCGTCAAGGAAATCAGAATGCAGCAGAAGCTACTCCCCCTAACAATATTTTGTTCCTTGAGAATTTACCCCACGAGACCAATAGCATGATGCTTGAATTGCTCTTCAAACAATACCCTGGGTTTAAGGAGGTCCGTCTGATCGAAGCAAAGCCGGGTATAGCTTTTGTAGATTTTGAAGATGATGTGCAGTCTTCCATGGCCATGCAAGCTCTTCAGGGCTTCAAAATTACTCCCCAGAATCCTATGGTCATCTCCTTTGCGAAAAAATAA 699 0.4263 MLSGDIPPNQTIYIKNLNEKIKKEELKRGLYCLFSQYGRILDVVALKTPKLRGQAWVCFTEVPAASNAVRQMQNFPFYDKPMRIQYAKSKSDCIAKEEGSYVPREKKKKQEEKAERKRRFEETHQNMPSAATGGTNVGANASARQGNQNAAEATPPNNILFLENLPHETNSMMLELLFKQYPGFKEVRLIEAKPGIAFVDFEDDVQSSMAMQALQGFKITPQNPMVISFAKK* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00930 232 SUPERFAMILY RNA-binding domain, RBD 8 223 IPR035979 GO:0003676
Pte18g00930 232 Gene3D - 4 116 IPR012677 -
Pte18g00930 232 CDD RRM1_U1A_like 11 88 - -
Pte18g00930 232 MobiDBLite consensus disorder prediction 98 124 - -
Pte18g00930 232 FunFam U1 small nuclear ribonucleoprotein A 4 109 - -
Pte18g00930 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 232 IPR000504 GO:0003723
Pte18g00930 232 Gene3D - 146 232 IPR012677 -
Pte18g00930 232 FunFam U2 small nuclear ribonucleoprotein B'' 149 232 - -
Pte18g00930 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 82 IPR000504 GO:0003723
Pte18g00930 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 219 IPR000504 GO:0003723
Pte18g00930 232 CDD RRM2_U1A_like 156 228 - -
Pte18g00930 232 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 9 90 - -
Pte18g00930 232 MobiDBLite consensus disorder prediction 125 155 - -
Pte18g00930 232 SMART rrm1_1 11 85 IPR000504 GO:0003723
Pte18g00930 232 SMART rrm1_1 159 228 IPR000504 GO:0003723
Pte18g00930 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 89 IPR000504 GO:0003723
Pte18g00930 232 MobiDBLite consensus disorder prediction 98 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00930 Pte-Chr18 21814252 21818348 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00930 3 232 Eukaryotic Initiation Factors Gene Family AT1G71770 23.305 3.05e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00930 K11094 - qsa:O6P43_020422 360.533