Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00903 ATGGCTATACAAACCACTGTAAATCTATCAGAGATTGTGATTCTCGAGGGGCAGAAGTCTTTGACACCCACAAATGAAGCTGAAACAGAGCATAACCCATCATGCAAAACAAAGAAGAGAGTTCAGCAAAGGCTTGTGAGGATTATACTCACTGATGCTGATGCTACTGACTCTTCTAGCGATGAAGACGAACTCAGAAGAAGGCCTGCGCGAAGAGTGAAAAGACATGTTAAAGAAATCAGCTTGGAGCTTCCTTCTTCAGACTATGCTCCTCTTTATTCCACTTCTTCCTCAGCTGCAGGGCAACCCCATAGCAAAAAGCCAAAGAGAATTTCAATCAGTAGTGATAATAGTAAAGCCACTCCTCTTCACAAGTTCAGAGGGGTACGGCAGAGACCTTGGGGACGATGGGCCGCTGAGATCCGCGACCCGAACCGGCGCAAACGGGTATGGCTTGGAACCTTCGATACGGCAGAAGAAGCTGCCACTGTTTACGACCAAGCCGCGCTGAAACTTAAGGGTCCTCACGCTGTCACGAACTTTCCTAACTCCGTGATGATGGAGACTCCGAAAGTTGAAATCGTCAGTACTGATGGTTTGGGCTCTACTGAGGCGGGTGTTACCTTGTCCTCACCCACTTCGGTCCTCCGTTATGACGACGGATTCAAGTCGTTTGGTGGCTTGGGTTACAGCGAAGTGGACGCCTTCGGTTTCTGTATCGACTCGCCGTTAATTTGCCCGGGAATGCTCTTGTCTGGTCAGCGTTTACGCGAAGAAGAGTTCAGCGAATTTGACATAGACGAGTTCTTAGTGGACATGGCGTCATGA 828 0.4879 MAIQTTVNLSEIVILEGQKSLTPTNEAETEHNPSCKTKKRVQQRLVRIILTDADATDSSSDEDELRRRPARRVKRHVKEISLELPSSDYAPLYSTSSSAAGQPHSKKPKRISISSDNSKATPLHKFRGVRQRPWGRWAAEIRDPNRRKRVWLGTFDTAEEAATVYDQAALKLKGPHAVTNFPNSVMMETPKVEIVSTDGLGSTEAGVTLSSPTSVLRYDDGFKSFGGLGYSEVDAFGFCIDSPLICPGMLLSGQRLREEEFSEFDIDEFLVDMAS* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00903 275 PIRSF PTI6 18 274 IPR017392 GO:0003700
Pte18g00903 275 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Pte18g00903 275 MobiDBLite consensus disorder prediction 91 126 - -
Pte18g00903 275 SUPERFAMILY DNA-binding domain 125 184 IPR016177 GO:0003677
Pte18g00903 275 Pfam AP2 domain 125 174 IPR001471 GO:0003700|GO:0006355
Pte18g00903 275 Gene3D AP2/ERF domain 124 184 IPR036955 GO:0003700|GO:0006355
Pte18g00903 275 CDD AP2 125 184 IPR001471 GO:0003700|GO:0006355
Pte18g00903 275 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Pte18g00903 275 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Pte18g00903 275 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Pte18g00903 275 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 42 216 - -
Pte18g00903 275 FunFam Ethylene-responsive transcription factor 2 124 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00903 Pte-Chr18 21507990 21510342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00903 36 218 AP2-EREBP Transcription Factor Family AT4G27950 50.259 3.68e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pte18g00903 AP2 2.1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00903 K13434 - qsa:O6P43_020468 264.618