Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00899 ATGCTTTCATGTGCTGGAGCTGATAGACTCCAAACTGGGATGAGGGGTGCTTTTGGAAAACCACTGGGTACCTGCGCAAGAGTTGACATTGGTCAAGTCCTCCTTTCTGTTCGTTGCAAGGACAGCAACAGTCATCATGCTCAAGAGGCCCTTCGCCGGGCTAAGTTCAAGTTCCCTGGTCGCCAAAAGATCATAGTCAGCAGAAAGTGGGGATTTACCAAGTTTAACCGCAATGATTATGTGAGATTGAAGAAAGAGAACCGTATTCTCCCAGATGGTGTCAATGCTAAGCTTCTTGGATGTCATGGACCTCTGTCTAATCGTCAACCTGGAAGAGCGTTCTTGGAAGCTGCTACTTAG 360 0.475 MLSCAGADRLQTGMRGAFGKPLGTCARVDIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRNDYVRLKKENRILPDGVNAKLLGCHGPLSNRQPGRAFLEAAT* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00899 119 Pfam Ribosomal protein L16p/L10e 5 65 IPR016180 GO:0003735|GO:0005840|GO:0006412
Pte18g00899 119 ProSitePatterns Ribosomal protein L10e signature. 7 28 IPR018255 GO:0003735|GO:0005840|GO:0006412
Pte18g00899 119 PANTHER 60S RIBOSOMAL PROTEIN L10 1 112 IPR001197 GO:0003735|GO:0005840|GO:0006412
Pte18g00899 119 CDD Ribosomal_L16_L10e 10 65 IPR016180 GO:0003735|GO:0005840|GO:0006412
Pte18g00899 119 Gene3D Ribosomal protein L10e/L16 1 77 IPR036920 GO:0003735|GO:0005840|GO:0006412
Pte18g00899 119 FunFam 60S ribosomal protein L10, putative 74 115 - -
Pte18g00899 119 SUPERFAMILY Ribosomal protein L16p/L10e 1 72 IPR036920 GO:0003735|GO:0005840|GO:0006412
Pte18g00899 119 Gene3D - 78 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00899 Pte-Chr18 21464350 21465446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00899 1 117 Cytoplasmic Ribosomal Protein Gene Family AT1G26910 85.470 4.97e-73 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00899 K02866 - rcu:8283224 230.72