Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00877 ATGCAATGGCTGGAAGCAAATTCAGGACGGTTGCCGTGGCTTAGGGTTTTCTGTATCTATGTAATTATTACAGAACTGTGTACTTTCAAAACACCAAAAAATAAAATAAAGCTTGACATGAAGCTTTCAACATCAGGGTTGGGTCAGCAAGGGCACGAAGGAGGGGAGAAGAAATGTCTGAATTCAGAGCTATGGCATGCATGTGCAGGACCCCTCGTGTCCCTACCCAATGCCGGGACTCGAGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCTACAACTAACAGGGAAATTGATGGCCAAATCCCCAATTACCCGAGCTTGCCACCACAGTTAATATGCCAACTCCATAATGTTACTATGCATGCAGATGTTGAGACGGATGAAGTATATGCACAAATGACACTACAGCCACTCACACTGCAAGAGCAAAAGGAGACGTTTCTCCCTATGGAATTTGGAGTTCCAAGTAAGCAGCCCACAAATTATTTCTGCAAGACATTAACTGCAAGTGATACCAGCACTCATGGAGGGTTCTCAGTTCCTCGTCGCGCTGCTGAGAAAGTTTTCCCTCCCCTGGATTTTTCGCAGCAACCACCTTGTCAAGAACTCATTGCGAGGGATCTCCATGATGTCGAGTGGAAATTTAGACACATCTTTAGGGGACAGCCAAAACGACACCTTCTTACAACTGGCTGGAGTGTGTTTGTCAGTGCGAAGAGACTCGTTGCTGGAGATTCTGTGCTTTTTATATGGAATGAAAAGAATCAGCTCCTACTTGGAATTCGCCGTGCCAATCGACCACAAACTGTTATGCCATCATCTGTCCTTTCAAGTGATAGCATGCACATTGGACTACTTGCTGCTGCTGCTCATGCTGCAGCAACAAATAGCTGCTTTACGGTTTTTTATAATCCTAGGGCTAGTCCATCAGAATTTGTCATACCTCTTTCAAAATATGTGAAAGCTGTTTATCATACTCGCGTGTCTGTCGGAATGCGATTCCGGATGCTTTTTGAGACTGAAGAATCCAGTGTCCGCAGGTATATGGGTACAATAACAGGCATTAGCGATTTGGATCCTGTCCGTTGGCCGAATTCTCATTGGCGTTCTGTCAAGGTTGGTTGGGATGAATCGACAGCGGGAGATAGACAGCCAAGGGTATCGTTGTGGGAAATTGAGCCTTTAACAACATTTCCAATGTATCCATCACTGTTTCCTCTTAGACTGAAACGTCCATGGCATCCAGGGGCTTCTTCTTTGAATGATGGAAGAGATGAAGCGACCAATGGCTTAATGTGGTTAAGAGGCTCTACTGGAGATCCGAGCCTTAATTCCCTCAACTTTCAAGGTACTGGTATGTTGCCTTGGATGCAGCAGAGACTCGATCCAGCTATGTTAGGAAATGAACATAATCAGTACCAAGCCATGCTTGCAGCTGGTATGCAGAACATGGGTACTGGAGAAATTTTGAGACAGCAACTCATGCACTTTCAGCCCCCTTTTCAGTATCTTCAGCAATCAGGAAGTCCCAACTCTCTAATGCAGCTTCAACAGCCGCAAGCTCTTCAGCAATCAGCATCTCCAAATATCCTGCAGCCACAAACACAACTTCAGGGACAGAGTGCACCACAGCACCATCACCAAGATACTTTACGAGATACACTTCTAATTCACAATGATCAGCTCAATCAGAGGCAACAGGTGAACATGCCTTCGCCATCATATTCGAAACCTGATTTCATGGATTTAAGCATCAAGTTCCCTGTAGCTGTTAACCCTGGTCAAAACATGCTTAGTCCTCTCTGTCCCGAGGGGAGTAGCAATGTTCAGACCTTAACTAGGAGTTCTCAGAATATTCCGCCTGAGCAGCTGCACCAACATCAGTGGGCTTCAAAATATGCTTCTATGGAGCTTAATGCTTTTGGAAACTCAGCTTCACGTGCAGAATTTCCTGGAAGAGATTCGTCTGTGCAACACGTTAGCTCTGACAACCAGAATCCTACACTTTTTGGTGTAAATATTGAAACATCTGGACTGTTACTTCCAACCACTGTACCTAGATCTTCTGTTGTTGATGATTCATCTACAATGCCAATAGGGGATTCTGAATTTCAAAGTTCTTTGTATGGTTGTGTGCAAAATGCATCTGGGTTGTTGCAGAGTGCAGCTCAAATTGACCCACAAAACTCAGCTCCAACATTTGTCAAGGTTTACAAATCTGGGTCTGTTGGGCGCTCGCTAGACATCTCTCGCTTCAGCAGCTATAATGAGCTGCGTGAGGAGTTAGCACAGATGTTTGGCATTGAGGGGAAATTAGAAGACCCTCGTAGATCAGGCTGGCAGCTTGTATTTGTTGACAGGGAAAATGACGTGCTTCTCCTTGGAGATGACCCGTGGGAATCCTTCGTCAATAATGTTTGGTATATCAAAATTCTTTCTCCTGAGGATGTCCAGAAAATGGGAGAACAAGCAGTTGAAGCGCTCAGCCCTACTGCAGTGGGCCAAAGGTTGAACGTGCAGGGTAGTGAATCTCATGATTTTTCTGGTTTACCATCTATTGGTTCATTTGAATATTAA 2589 0.4496 MQWLEANSGRLPWLRVFCIYVIITELCTFKTPKNKIKLDMKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPNAGTRVVYFPQGHSEQVAATTNREIDGQIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTLQEQKETFLPMEFGVPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPCQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGASSLNDGRDEATNGLMWLRGSTGDPSLNSLNFQGTGMLPWMQQRLDPAMLGNEHNQYQAMLAAGMQNMGTGEILRQQLMHFQPPFQYLQQSGSPNSLMQLQQPQALQQSASPNILQPQTQLQGQSAPQHHHQDTLRDTLLIHNDQLNQRQQVNMPSPSYSKPDFMDLSIKFPVAVNPGQNMLSPLCPEGSSNVQTLTRSSQNIPPEQLHQHQWASKYASMELNAFGNSASRAEFPGRDSSVQHVSSDNQNPTLFGVNIETSGLLLPTTVPRSSVVDDSSTMPIGDSEFQSSLYGCVQNASGLLQSAAQIDPQNSAPTFVKVYKSGSVGRSLDISRFSSYNELREELAQMFGIEGKLEDPRRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDVQKMGEQAVEALSPTAVGQRLNVQGSESHDFSGLPSIGSFEY* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00877 862 Gene3D - 331 403 - -
Pte18g00877 862 Gene3D - 165 268 IPR015300 -
Pte18g00877 862 FunFam Auxin response factor 731 825 - -
Pte18g00877 862 FunFam Auxin response factor 331 403 - -
Pte18g00877 862 Pfam Auxin response factor 293 376 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte18g00877 862 Pfam AUX/IAA family 732 821 IPR033389 -
Pte18g00877 862 SUPERFAMILY DNA-binding pseudobarrel domain 151 296 IPR015300 -
Pte18g00877 862 Pfam B3 DNA binding domain 167 268 IPR003340 GO:0003677
Pte18g00877 862 ProSiteProfiles PB1 domain profile. 736 820 IPR000270 GO:0005515
Pte18g00877 862 ProSiteProfiles B3 DNA-binding domain profile. 167 269 IPR003340 GO:0003677
Pte18g00877 862 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 56 825 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte18g00877 862 SMART B3_2 167 269 IPR003340 GO:0003677
Pte18g00877 862 Gene3D - 732 825 - -
Pte18g00877 862 FunFam Auxin response factor 165 269 - -
Pte18g00877 862 CDD B3_DNA 166 267 IPR003340 GO:0003677
Pte18g00877 862 SUPERFAMILY CAD & PB1 domains 736 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00877 Pte-Chr18 21197461 21205266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00877 137 828 B3 DNA Binding Superfamily AT5G37020 64.722 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte18g00877 AUX_IAA 1.2e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00877 - - gmx:100784804 1359.74