Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte18g00868 | ATGCATACTGTGATGCTAACTATGGAGGAAGGACCCCAACACCGACAAGAGGATCAAGTTATCAACAGGGTTCTGTCTCGGTGTGCAGACGAGAATGCAGTGTGTAAATGGAAGTTTGTTCACCACGTTGTCACTGCATTCTTAGTTCTGAGGCATTCTGCTGCTAATGATAAGGTTACCATACTTGTTGGGAAACCGCGGACTTCTCATTCGATCTCTTTCATCTGCTATTCTCGTCCATTAAACTGGAAATTGCAAACTATGAGAGAAGAATCTTTAGCAAGAGGCCATTCTGACAGAACAATTGAACAGGATGAGAAATATGTGATGTGGTACTCAGGACAGGAGGAGAAACAGTTGAGATTGACCTCAGTAACACAAATTTTTTGGGGGCAGAGGAATGTAAAATCACAGAGACAAATTCTTCCTGACAGAGATTGTCAATCATTTTCTATAATCTATGAAAATGGTGCTCACTCACTTGACCTGATATGCAAAGACAATGCACAGGCTGCTACTTGGTTTACGGGCTTGAGAGCTGTAATATCTCAATCCCAAAATTCTAGACACTTTAGTAGCATGAGGAGAAACAAAGAGGTGCAGAGTTGTGTTCATAGTCCATCTGGATTTATCCGCAGAAAGCATAATTTAGGTCTTCTAGAGGATAATGCTGATCTCGATCAGGTACGCAGCTTGTGTGGAAGTCCTGCTCTCTCACTTTCTGATAGGTGTTATTCTGATGGACTGTCCTATACTACCAAAAGCACTTATTCCACAGACTCTGTTATGTCAAATCCACAAAATGTAAACAGGAATTCAATTCTTTATCTTCCACATTTTGATTCAAATCATGTCAATAAGAAAGGACGTGAAATTACTAATGCAAATTATGAGAAGGTTGCACCTAATGGCTTTTCTGTGCAAGCTTCTATTTCCTCAAGTATAGTTAACAGCAATCCTTTGAAGGATGTAATGGTCTGGGGCAAAGTACTTGAAGGAGGAGGGATACTGGGCAGTGGAATTATTCTGCCAAGGTTGCTAGAATCCACCAAGATGCTGGATGTAGAATGCATATCTTTAGGGGGAAAGCATGCTGCGGTAGTCACTAAACAAGGGGAGCTCTTCTGCTGGGGTCAAGGGAAAGGAGGGAGGCTAGGGCATAAAGTTGATATGGATTTCAATTCTCCACGAATTGTTGATTCCCTTTGTGGTATACATGTAAAATATGCTGCTTGTGGTGAGTATCATACATGTGCTCTAACAAGTTCTGGAGAAGTATACATGTGGGGTGATGCTAGTTGTGGAACTGATTTGGTTAGTGAAGAGAGGACTAAAAGTCAATGGATACCTCGTAGACTTTCGACTTTGGATGGTGTTTATGTTTCTATTATTGCTTGTGGAGAATGGCATACAGCTATTGCATCAAACTGTGGGCGGCTGTTTACATATGGAGAAGGAACATTTGGAGCTCTAGGACATGGGGACCTTCTTACAGTTTCCCAACCCAGGGAAGTTGAATCTTTAAAAGGGCTTACGGTGAGGTCTGTGTCTTGTGGATCGTGGCATACAGCTGCTATTGTTGAAGTAGTGGTTGACTGCTATAAGTATAACACTCTATCCGGGAAACTATTCACATGGGGTGATGGTGATCATGGGAAGCTTGGTCATGCTGATGGGATGAAGAAGCTTTTACCGACATGCGTTGCACAATTGGTTGATTATGATTTTGTTCAAGTATCATGTGGAACAATTCTAACTACTGCACTTACAAATTTAGGTAGAGTATTTACAATGGGAAGTGCATTGCATGGACAGTTAGGAAATCCACAGGCCAAGGATAAATCAATAGCAATTGTTGAAGGAAAGCTAAAACCAAAGTTCGTGAAGGGAATTTCATCTGGTTCAAATCATGTTGCTGTCTTGACTTCAGATGGGATTGTTTACACATGGGGAAAGAATGCAAATGGACAGCTTGGACTTGGTGACACTAGAGACAGACATTCACCTACTGTCGTTGAGGCTTTGATGGATAGGCAGGTTGAAAGCATCATATGTGGATCATGTTTCACAGCTGCAATTTGCTTGCACAAACCGATTTCTGTTATTGACCAATCAAGTTGTAGTGGATGCAAATCAACTTTTGGATTGACAAGGAAGAAGCATAACTGTTACAATTGTGGCCTTTTCTTCTGCCATTCTTGTAGCTGTCAAAAGGTCACTAATGCATTTCTTGCACTCAACAAAACCAAGGCTTCCCGAGTTTGTAACCAATGCTTTAACAATCGATTGAGAAGTGATCATTCGGGAATGTTAATAGCTAATGGATTTTGCAGCATCCAGCAGCCTTGGGGCTCTGACATACTTCCTAAGCATGAAGCTCTATTTAAGGCACCAGATAGACATTTTCAAAATTTGTCTGATAAAAATTTATATAAGAAAGATGGGAGTGTTGAGAAGAGAGAATCAGATGGATCACAAGAAGCTCGGCAGAATTTGGAAAATATCCCATCTTTGACTGGAGGCATTCTTGCAATGCCTCCATGGGGACAAGTCCCTCGTCCCATGCTATTTAATGTAGAAAACCTGGATGTTCATATGATCTCTGCTAAAATGAAACAACCATATGTAACTTCAACTAACCTAAACTCTAGCATTTCCGGTATTCCACATACAGACCAAAATGCATCAAGACATGACGAGATGCTCATTAAAGAACTTCAGAAGCTGAAAAAACAGTCTAGGATCCTTGAGGAGCAATGTGAGCTAAGAAGCCACAAGATACAAGAATGTAGTCAGAAAATAGACGCGGCTTGGGCCATGGCGAGAGAAGAAGCCACAAAATGTAAGGCAGCTAAGGATGTTATCAAGGCCTTGGCAGCGAGACTTCATAATTTGTCAGACAAAGGCAATGGTGACAAGGAAGTGAAGCAGGGTAGAGCAGATACAGGCCTGACTCCCTTAACAACAATACTTACAGGTCGCTCTTGTCCCAAGGATCCTATCCAAATCTTAGATAGTACGCCCATGCCTGCTGAAGTCAAATTGCAGAAAGACAGAAATCTGGAAATTCTATCTAATTCTCCTTTCTTGTTTTCTGCTTCTTTGAAGTCTAAGTGTGGGATAAACACATTATCTAAAAGCCATCAACTAGCTGATGATTCGCGTCTCACTGGAAAAGAATCTTTAGAGGACATAAGTGAAGTGTCAAAGCTTCAATGTGTAGAACAGTATGAGCCTGGTGTGTATATTACACTTGCAGTCATGCCAAACGGGCAAATTGGACTGACGAGAGTAAGGTTTAGCCGAAAACAATTTGCTGAGAGGGAAGCAGAGATATGGTGGGAAAGGAATCAAGTCAGAGTCTATGAGAAGTACAAGATAGAAGGATATACCAATTCAAACGAGAAGTCATCTTCGAAAGAATGA | 3426 | 0.4124 | MHTVMLTMEEGPQHRQEDQVINRVLSRCADENAVCKWKFVHHVVTAFLVLRHSAANDKVTILVGKPRTSHSISFICYSRPLNWKLQTMREESLARGHSDRTIEQDEKYVMWYSGQEEKQLRLTSVTQIFWGQRNVKSQRQILPDRDCQSFSIIYENGAHSLDLICKDNAQAATWFTGLRAVISQSQNSRHFSSMRRNKEVQSCVHSPSGFIRRKHNLGLLEDNADLDQVRSLCGSPALSLSDRCYSDGLSYTTKSTYSTDSVMSNPQNVNRNSILYLPHFDSNHVNKKGREITNANYEKVAPNGFSVQASISSSIVNSNPLKDVMVWGKVLEGGGILGSGIILPRLLESTKMLDVECISLGGKHAAVVTKQGELFCWGQGKGGRLGHKVDMDFNSPRIVDSLCGIHVKYAACGEYHTCALTSSGEVYMWGDASCGTDLVSEERTKSQWIPRRLSTLDGVYVSIIACGEWHTAIASNCGRLFTYGEGTFGALGHGDLLTVSQPREVESLKGLTVRSVSCGSWHTAAIVEVVVDCYKYNTLSGKLFTWGDGDHGKLGHADGMKKLLPTCVAQLVDYDFVQVSCGTILTTALTNLGRVFTMGSALHGQLGNPQAKDKSIAIVEGKLKPKFVKGISSGSNHVAVLTSDGIVYTWGKNANGQLGLGDTRDRHSPTVVEALMDRQVESIICGSCFTAAICLHKPISVIDQSSCSGCKSTFGLTRKKHNCYNCGLFFCHSCSCQKVTNAFLALNKTKASRVCNQCFNNRLRSDHSGMLIANGFCSIQQPWGSDILPKHEALFKAPDRHFQNLSDKNLYKKDGSVEKRESDGSQEARQNLENIPSLTGGILAMPPWGQVPRPMLFNVENLDVHMISAKMKQPYVTSTNLNSSISGIPHTDQNASRHDEMLIKELQKLKKQSRILEEQCELRSHKIQECSQKIDAAWAMAREEATKCKAAKDVIKALAARLHNLSDKGNGDKEVKQGRADTGLTPLTTILTGRSCPKDPIQILDSTPMPAEVKLQKDRNLEILSNSPFLFSASLKSKCGINTLSKSHQLADDSRLTGKESLEDISEVSKLQCVEQYEPGVYITLAVMPNGQIGLTRVRFSRKQFAEREAEIWWERNQVRVYEKYKIEGYTNSNEKSSSKE* | 1142 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte18g00868 | 1141 | ProSiteProfiles | BRX domain profile. | 1071 | 1126 | IPR013591 | - | |
| Pte18g00868 | 1141 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 645 | 696 | IPR000408 | - | |
| Pte18g00868 | 1141 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 701 | 763 | IPR017455 | - | |
| Pte18g00868 | 1141 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 322 | 371 | IPR000408 | - | |
| Pte18g00868 | 1141 | Coils | Coil | 899 | 919 | - | - | |
| Pte18g00868 | 1141 | Pfam | FYVE zinc finger | 704 | 761 | IPR000306 | GO:0046872 | |
| Pte18g00868 | 1141 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 372 | 423 | IPR000408 | - | |
| Pte18g00868 | 1141 | SUPERFAMILY | PH domain-like | 104 | 182 | - | - | |
| Pte18g00868 | 1141 | Coils | Coil | 948 | 968 | - | - | |
| Pte18g00868 | 1141 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 699 | 769 | IPR013083 | - | |
| Pte18g00868 | 1141 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 410 | 435 | - | - | |
| Pte18g00868 | 1141 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1072 | 1125 | IPR013591 | - | |
| Pte18g00868 | 1141 | SUPERFAMILY | FYVE/PHD zinc finger | 704 | 768 | IPR011011 | - | |
| Pte18g00868 | 1141 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 478 | 529 | IPR000408 | - | |
| Pte18g00868 | 1141 | PRINTS | Chromosome condensation regulator RCC1 signature | 374 | 390 | IPR000408 | - | |
| Pte18g00868 | 1141 | PRINTS | Chromosome condensation regulator RCC1 signature | 424 | 440 | IPR000408 | - | |
| Pte18g00868 | 1141 | PRINTS | Chromosome condensation regulator RCC1 signature | 464 | 480 | IPR000408 | - | |
| Pte18g00868 | 1141 | PRINTS | Chromosome condensation regulator RCC1 signature | 640 | 661 | IPR000408 | - | |
| Pte18g00868 | 1141 | PRINTS | Chromosome condensation regulator RCC1 signature | 355 | 368 | IPR000408 | - | |
| Pte18g00868 | 1141 | PRINTS | Chromosome condensation regulator RCC1 signature | 582 | 600 | IPR000408 | - | |
| Pte18g00868 | 1141 | PRINTS | Chromosome condensation regulator RCC1 signature | 480 | 494 | IPR000408 | - | |
| Pte18g00868 | 1141 | SUPERFAMILY | RCC1/BLIP-II | 322 | 697 | IPR009091 | - | |
| Pte18g00868 | 1141 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 644 | 693 | IPR000408 | - | |
| Pte18g00868 | 1141 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 478 | 526 | IPR000408 | - | |
| Pte18g00868 | 1141 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 540 | 589 | IPR000408 | - | |
| Pte18g00868 | 1141 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 424 | 477 | IPR000408 | - | |
| Pte18g00868 | 1141 | Gene3D | - | 94 | 190 | IPR011993 | - | |
| Pte18g00868 | 1141 | Gene3D | - | 440 | 697 | IPR009091 | - | |
| Pte18g00868 | 1141 | CDD | FYVE_like_SF | 706 | 759 | - | - | |
| Pte18g00868 | 1141 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 541 | 592 | IPR000408 | - | |
| Pte18g00868 | 1141 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 516 | 526 | IPR000408 | - | |
| Pte18g00868 | 1141 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 593 | 644 | IPR000408 | - | |
| Pte18g00868 | 1141 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 118 | 964 | - | - | |
| Pte18g00868 | 1141 | SMART | fyve_4 | 695 | 764 | IPR000306 | GO:0046872 | |
| Pte18g00868 | 1141 | Gene3D | - | 270 | 439 | IPR009091 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte18g00868 | Pte-Chr18 | 21101619 | 21109879 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte18g00868 | 1072 | 1130 | Major Intrinsic Protein MIP | AT1G31880 | 38.983 | 2.69e-08 | 55.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte18g00868 | - | - | qsa:O6P43_014230 | 1102.04 |