Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00857 ATGCCTTTCTACGTCAGTTGCATGGCTTCTATTCCTAAAGTTTATTCAAGCAATGCATTCCCAGCTGATCAATTTTTTGAGTTCCAGAATCCACGAATGGCAAAATCAATTGGTGGTGCTCCATTCATAGAGGGTGCAATATGGGATAGAGATCAATTTGTTCAATTGTTTGACGATGATGCACTTGATCATATTGTGCCATTTGCTTCTAATATGTCAATGGCATCTTCTGGTTGGATGCCGACTGCTCCAGATCAAATAGGCAACGTTAATGATACCTATCGCATGCAGATGCAGACCCCTCCTGGGCAATTAGGCGATGGTGATGCTTATGACGCATGGACTGATTTTGGAGAAGTATATCTTGAAGCTGGGAATGCCATAAATCTAGATGGTCTGCACCAACAAGAATTGAATCGGGCTGGGGCAGAATGCTTTGATTTTGTCGAGGACTTAAAGACACCTGCCTTTCCCACGCCTGATGGAGAAAATTGGGGATTCCAAAATACTCAACTGCAAGCTGTGGACCATACCAACATGAAGCCGCTTATGTACTCAGAAGAAGAGAGGAAGGAAAGGATTCGACGATATATGAAGAAAAGAAGCAAAAGAAACTTCAATAGAACCATCAAGTATGAGTGCCGCAAAACTATAGCTGACAAAAGAGTTAGAGTGAAAGGGAGATTTGCAAAGAAAAGTGAAACATGTTGCCAAGAAAAATTGGCAACAAAGAATGACAATCCACATAATGGTGATTTGCAATTGGCTGATTCACAGTTAAAAGCTGATGAAGGGTGCTGA 801 0.4157 MPFYVSCMASIPKVYSSNAFPADQFFEFQNPRMAKSIGGAPFIEGAIWDRDQFVQLFDDDALDHIVPFASNMSMASSGWMPTAPDQIGNVNDTYRMQMQTPPGQLGDGDAYDAWTDFGEVYLEAGNAINLDGLHQQELNRAGAECFDFVEDLKTPAFPTPDGENWGFQNTQLQAVDHTNMKPLMYSEEERKERIRRYMKKRSKRNFNRTIKYECRKTIADKRVRVKGRFAKKSETCCQEKLATKNDNPHNGDLQLADSQLKADEGC* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00857 266 Pfam CCT motif 190 232 IPR010402 GO:0005515
Pte18g00857 266 MobiDBLite consensus disorder prediction 242 266 - -
Pte18g00857 266 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 135 237 IPR045281 GO:0009909
Pte18g00857 266 ProSiteProfiles CCT domain profile. 190 232 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00857 Pte-Chr18 20980674 20982211 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00857 160 235 C2C2-CO-like Transcription Factor Family AT5G24930 34.568 6.11e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pte18g00857 CCT 7e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00857 - - vra:106761508 182.57