Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00853 ATGCTGAGTTATTCTTCCTCTAAAAAGGTAGACCAGGTTGAAAAAGGAACCAAACATATAGCCCGCACACCTCGGTGGCTTGACGCATTTCTGGAGAAGACCTTTTTTGATGGTTGTGAAGCCCATCCAGTCCGCCGAAATGAGTTAAACAAGTACTGCATCAACTGCAACCAGTCTGCTTGTCAATATTGCTTGTCTTCTGGTACTCATCGGAACCACAAGATACTTAAAATCTACAGACATGTCTACAAGGATGTTGTCTCCCTTGGCTCCATCGAAAAACATGTCGATTGCTCCCTAATTCAGCCATATAAGTGCAATAAGCGATTGGTTATAGCATTAAATCCTCTTCCCCACTCTGGCTCAACAACTAATGCTGAAGCATCCTGTGACATATGTCAGAGAAGGTTGACTGAACCAGATCTGTACCGTTACTGCTCTATTTCTTGTAAGGTCACTGCAGTCTCAAGAAAGCACCGTGACTCTGTGCCTCCCTTTATTTTTATCAAGGGCACGACCCCAGAAACAGAAACCAAAACTTCTGTCTCGCCAAGGCTATGTAACAAAAGGAAGGGAACACCCTCAAGGGCTCCCTTCTTCTAG 603 0.4444 MLSYSSSKKVDQVEKGTKHIARTPRWLDAFLEKTFFDGCEAHPVRRNELNKYCINCNQSACQYCLSSGTHRNHKILKIYRHVYKDVVSLGSIEKHVDCSLIQPYKCNKRLVIALNPLPHSGSTTNAEASCDICQRRLTEPDLYRYCSISCKVTAVSRKHRDSVPPFIFIKGTTPETETKTSVSPRLCNKRKGTPSRAPFF* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00853 200 CDD Bbox2 39 78 - -
Pte18g00853 200 Pfam B-box zinc finger 39 78 IPR000315 GO:0008270
Pte18g00853 200 ProSiteProfiles Zinc finger B-box type profile. 39 78 IPR000315 GO:0008270
Pte18g00853 200 SUPERFAMILY B-box zinc-binding domain 39 80 - -
Pte18g00853 200 Gene3D Classic Zinc Finger 33 97 - -
Pte18g00853 200 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 21 171 - -
Pte18g00853 200 Pfam PLATZ transcription factor 80 152 IPR006734 -
Pte18g00853 200 MobiDBLite consensus disorder prediction 176 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00853 Pte-Chr18 20958921 20961422 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Pte18g00853 PLATZ 1.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00853 - - qsa:O6P43_014262 306.99