Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00852 ATGTCTTCTTCAATCTTTGAGGTCCATCGGAAGAGGAAGAGAAAGGCCAAGACTTTTGGGTTTCACTCATTTGCAGAGCCTGGTTGTCCTATCAGTCCCACTGGTCCTTTCCGCGAAAACATACGTTTGTATCTTCAAGAATGCACAGTTGCTGAAGACTACAAGTTGCAAGGGTTGCCCACATGGTGTACTCTCCTTCTTCATGAAAAATCGAAGTCTGTTGTTCCGCTCTATACAATTGAAGAGAATATCAGAAGCTCCTCATCTCCCTTCTGTGACCATTGTAGATGTGCCGGTTGGGGTGGTCATCTTGTCTCAAAAAGGAGGTACCATTTGATAATCCCAATTGATGATGACTGGAACAAACCCTTGGATGATGAGGTTTTCGACTTTCAGACTCATCTTTTGCATGGTGTGTTTCACAGTAATGGGTTTGGACATTTGCTCTGCATTAATGGGATTGAAGGAGGCTCTAAGCATCTCAGCGGCAGAGAAATGATGGATCTTTGGGACAGAATCTGTACTAATCTTAGAACACGAAAAATCACAGTTGAGGATACTTCAAAGAAAAGATCAATGGACCTTCGGCTGCTTCATGGGGTTGCCTATGGACATCCTTGGTTTGGAAGATGGGGTTACAAGTTTTGTCGCGGAAGCTTTGGGGTCACAGTGGAAAGATACAATACAGCAATTGAAGAGTTGAGCTCACTGGGACTTGATAAGGTTTTAAGTGATTTCAGTGGCAGGAAGTGTCAGAGGGAAATCAAGCAAATAATCTGTCACTACAGGGACATGAGTGAAACCCAACTAATCACACTCAAAGATCTTCTCAGATTCATGCTAATTGTCAAGTCTTGCGCTCTTGCTTCAAGAAAACCAACGTCAGATGCAGGTCCTTATGCAATCTTCACCACCAGACCAGCAACCAGAGCAGCCTTGCAAGAGAGAACTAATCTGACAAAAGACAAGAGTGTCAGGTGCAAGAAATTTAGTACGGCTGTTGCCAGTATGGATAGTAGATGGCCAACTAGGAGACTAGAATTTGCTGCCGAAGTAATTGTGGAAGCTCTGAAGGAAAGAAAATTGAACAATTCCAGTCATAGTGGAATGACTCGCCAAGATGTTCGAGATGCTGCTCGGCTCCATATAGGTGATACAGGTTTGCTGGATTATGTTCTGAAATCAATGAACAATGTGATTGTTGGAAATTATATCGTCCGTCGTACTGTGAACCCAGCAACTCGGATATTAGAATACACGATTCACGAGCTTGTGAACGGGGATAAGGCCATTAGAACGGAACCTGAAATCATGCAAGAAACGAGTCCTGTTAGCTTGGATCAATCACCTGGGGTTGACGTTTACAGTGACGTGATTTCTCTATATAAAGCTATACTGCTGGCCTACCCCAACTCAGAGCCAGTTGAAATGGCTGTCCAGGCAATACTTGACAGTAAGCATTTCGTTAAAGAATGGCCTCTAAGAAGTGAGACGGAGCAGTTGACAATTATTTGCAGCATGAAGCTAAATATTTGTGGCTTCGAGTCTGCACTAGGGAGGGAACAGCCACCTGGAGTTATTGTACAAATTCCAGTGCACTCAACACTCAGAGAGTTAAAGGAAGTTGTTGAAACGTCTTTGAGGGATACATACTGTATCATGGAGCAGTTTGTGGTGACAGAAATTCAACATTTTGAGCAAATGAAAGATGGGCAAATGCTCTTTGGGTTGCTTGAGTCAGGCACAGAAATCTTTGTGAGGGGCATTGGGATTGATTTGCTTACTCCATTGAAGTATCAAGCCGGAGCAGAGAATTGGAAGGTGAAGTGTGAATGTGGGGCTCAAGATGACGATGGTGAAAGGATGGTGGCATGTGACATTTGTGAGGTATGGCAACACACTCGCTGCAGTGGCATTGAGGATGCTGAGCTAGTGCCACCATTGTTTGTATGCTCCGGTTGTTGCGATTCTTTAGCACCTCCTAAAACTGATTCACCCTTTGTTAGCGACTTCTATGACAGTTTTCTAATTTCCACTGAGCCTAATTACCTTATGGAGATTGGGTACTAA 2070 0.4372 MSSSIFEVHRKRKRKAKTFGFHSFAEPGCPISPTGPFRENIRLYLQECTVAEDYKLQGLPTWCTLLLHEKSKSVVPLYTIEENIRSSSSPFCDHCRCAGWGGHLVSKRRYHLIIPIDDDWNKPLDDEVFDFQTHLLHGVFHSNGFGHLLCINGIEGGSKHLSGREMMDLWDRICTNLRTRKITVEDTSKKRSMDLRLLHGVAYGHPWFGRWGYKFCRGSFGVTVERYNTAIEELSSLGLDKVLSDFSGRKCQREIKQIICHYRDMSETQLITLKDLLRFMLIVKSCALASRKPTSDAGPYAIFTTRPATRAALQERTNLTKDKSVRCKKFSTAVASMDSRWPTRRLEFAAEVIVEALKERKLNNSSHSGMTRQDVRDAARLHIGDTGLLDYVLKSMNNVIVGNYIVRRTVNPATRILEYTIHELVNGDKAIRTEPEIMQETSPVSLDQSPGVDVYSDVISLYKAILLAYPNSEPVEMAVQAILDSKHFVKEWPLRSETEQLTIICSMKLNICGFESALGREQPPGVIVQIPVHSTLRELKEVVETSLRDTYCIMEQFVVTEIQHFEQMKDGQMLFGLLESGTEIFVRGIGIDLLTPLKYQAGAENWKVKCECGAQDDDGERMVACDICEVWQHTRCSGIEDAELVPPLFVCSGCCDSLAPPKTDSPFVSDFYDSFLISTEPNYLMEIGY* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00852 689 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 13 662 - -
Pte18g00852 689 SUPERFAMILY FYVE/PHD zinc finger 602 660 IPR011011 -
Pte18g00852 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 597 659 IPR013083 -
Pte18g00852 689 ProSitePatterns Zinc finger PHD-type signature. 610 654 IPR019786 -
Pte18g00852 689 CDD PHD_MMD1_like 609 654 - -
Pte18g00852 689 SMART PHD_3 609 655 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00852 Pte-Chr18 20955822 20958427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00852 10 660 PHD Transcription Factor Family AT5G22260 34.097 1.53e-121 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00852 K26271 - qsa:O6P43_014263 981.474