Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00830 ATGACTTTCTCAAAAGCCACTTGCACTCGATCGAGGCAAAGCCCCAATGTTTCTTCAACTCAACAACGCACTGACGCTACGGTTTCAGACCACTGCTGTGCCCGTCACTACAAAAAGATCAAAATCAGAAACATTCTTACAAACATGATTTTGGAGATGGGTTTAGCTTGCGTCATCCCTTCCGGCCGCCGGCGAGACTGCGGCAAAGCTCTGGGGCTAGGTGAACACAACTTTAACGGTCATAAGCATGCAAACTTGGAGCATAACAAGGCATGGTTGCTTGCAGAGTCTGGTGGTGGTTGTGACGTAGAGTTGACGCATGCCGAGCCCCAATCAGTTCACTCTTCATTCAGGTTCAGCTTCAGTTCTCAGGTAGAGTTAGAGTCCATGAACATGAACTCTTCGGCGGCTGCAACTGTGTTGATGGTCAATTTAGACACTGGGGTGAGTGAATCCCGAGCCAGAGAATTAAAATGGCGGAAATTTCAGTCTTTGGAGAGGAGCATATCTCCAATTTCCAATTCTTTGATCAGATACAACTATGGTGAAATTCTAGCGGCTACAAGCAATTTCTCGAATAGGAGAGTATTGGGAAGAGGGGCCCTGAGCTGTGTTTTTAGGGGTAGAGTTGGGCTTTTGAGGACAACTGTGGCTATTAAGCGGTTGGACAAGGAGGACGAGGAATCTCCCAAAGCTTTTTGTAGAGAATTGATGATTGCCAGTTCTCTACACAACCCGAATGTTGTTCCTCTTGTTGGATTCTGCGTTGATGCAGAAGAGGGTCTGTTTTTGGTATACAAGTATGCATCAGGAGGCAGCTTAGAGCGTCATTTACATGGGAGAAAAAAAAGCGTGAAAGGGAGTTCCTCACTTCCATGGTCTGTGAGGTATAAGGTTGCCATTGGAATAGCAGAAGCTGTAGCATACCTCCATAACGGAACTGAAAGATGTGTTGTGCATAGAGATATCAAGCCCTCCAATATTCTCCTTTCCTCTACGAAGAGACCAAAGTTGTGTGATTTTGGACTAGCAACCTGGACTTCCGCACCTTCAGTCCCTTTCCTTTGCAAGACTGTGAAGGGAACATTTGGGTATTTGGCTCCCGAGTATTTTCAGCATGGGAAAGTGTCAGACAAGACTGATGTCTATGCTTTCGGGGTGGTCTTATTGGAACTTATAACTGGAAGAAAGGCCATTGAAGCAAAAAGGCCACCAGGAGAGGAGAACCTGGTATTGTGGGTAGGTCCATGCTCTAATTTTGTGTGCGCAAAATTTGCTAAAATTCCAGACTTCGTAAAGATTGTATTCTCGGCCTCTCGACCTTATTAA 1329 0.4567 MTFSKATCTRSRQSPNVSSTQQRTDATVSDHCCARHYKKIKIRNILTNMILEMGLACVIPSGRRRDCGKALGLGEHNFNGHKHANLEHNKAWLLAESGGGCDVELTHAEPQSVHSSFRFSFSSQVELESMNMNSSAAATVLMVNLDTGVSESRARELKWRKFQSLERSISPISNSLIRYNYGEILAATSNFSNRRVLGRGALSCVFRGRVGLLRTTVAIKRLDKEDEESPKAFCRELMIASSLHNPNVVPLVGFCVDAEEGLFLVYKYASGGSLERHLHGRKKSVKGSSSLPWSVRYKVAIGIAEAVAYLHNGTERCVVHRDIKPSNILLSSTKRPKLCDFGLATWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYAFGVVLLELITGRKAIEAKRPPGEENLVLWVGPCSNFVCAKFAKIPDFVKIVFSASRPY* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00830 442 Pfam Protein kinase domain 192 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte18g00830 442 FunFam probable serine/threonine-protein kinase PBL7 152 268 - -
Pte18g00830 442 Gene3D Phosphorylase Kinase; domain 1 151 268 - -
Pte18g00830 442 ProSiteProfiles Protein kinase domain profile. 191 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte18g00830 442 SMART serkin_6 191 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte18g00830 442 SUPERFAMILY Protein kinase-like (PK-like) 170 414 IPR011009 -
Pte18g00830 442 Gene3D Transferase(Phosphotransferase) domain 1 270 435 - -
Pte18g00830 442 PANTHER OS08G0249100 PROTEIN 124 416 IPR046958 -
Pte18g00830 442 MobiDBLite consensus disorder prediction 1 25 - -
Pte18g00830 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 318 330 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00830 Pte-Chr18 20265563 20268886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00830 179 435 Trihelix Transcription Factor Family AT1G70460 40.467 2.14e-55 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Pte18g00830 Pkinase 3.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00830 - - qsa:O6P43_014312 627.861