Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00827 ATGGATCACCTGTTGGGTCTGCTCAGAATTCGCATTCTGAGGGGCGTGAATCTTGCTGTTCGAGATTTAAAGAGCAGTGATCCTTACGTTATTGTCAAGCTGGGCAAGCAAAAGCTGAAAACTCGCGTGGTCAAGAACAACCTCAATCCGGAGTGGAATGAAGAATTGACTCTATCCATTACAGAACCTATCCTCCCAATACAACTTTTTGTGTATGACAAAGACACGTTTACTCCAGATGACAAAATGGGGGATGCAGAATTTGAGATTGGTCCCTTTCTGCAAGCTGTGATGATGAAGACGCGGTTCAAGAACCTTCCTTGTGGGATTGTAATTGCAAAAGTGCAGCCTACAAGACAGAACTGCCTAGCTGAAGAGAGCCCCATCATGTGGAAAGATGGGAAAATTGTACAAGACATGGTTCTTAGACTGCGTAATGTGGAGAGCGGTGAAGTTGAACTTCAGTTAGAGTGGATTGACGTCCCAGCTGCCAATGGTTTGTAG 504 0.4504 MDHLLGLLRIRILRGVNLAVRDLKSSDPYVIVKLGKQKLKTRVVKNNLNPEWNEELTLSITEPILPIQLFVYDKDTFTPDDKMGDAEFEIGPFLQAVMMKTRFKNLPCGIVIAKVQPTRQNCLAEESPIMWKDGKIVQDMVLRLRNVESGEVELQLEWIDVPAANGL* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00827 167 SMART C2_3c 7 102 IPR000008 -
Pte18g00827 167 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Pte18g00827 167 Pfam C2 domain 6 94 IPR000008 -
Pte18g00827 167 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 4 163 IPR044562 -
Pte18g00827 167 CDD C2_ArfGAP 16 150 - -
Pte18g00827 167 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 100 IPR035892 -
Pte18g00827 167 Gene3D C2 domain 4 164 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00827 Pte-Chr18 20208351 20210469 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00827 38 167 C2H2 Transcription Factor Family AT1G70790 60.000 9.34e-53 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00827 - - jre:108987956 249.21