Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00817 ATGCGCGGGTACAGTCCACAGCACTACAGTCCTCCTAGGAGAGGATATGGTAATCACGGAAGGAGTCCTCCAAGAAGAGGACATGGTGGACGTGGACGTGGAGGTAGACGCAGGGAGCAGAATCATGGAAGTCTTTTGGTCAGGAACATTCCTTTAGATTGCAGATCTGAGGAACTTCGTGGACCCTTTGAGAAATATGGACAGGTTAGGGATGTCTATATCCCCAGAGACTATTACACGGGAGAACCACGAGGCTTTGCATTCGTTGAGTTTGTGGATGCGTATGATGCCTCTGAAGCACGGTATCATATGAATGGAAAAATCTTTGCTGGGCGGGAGATATCTGTTGTTGTTGCAGCAGAATCGCGGAAAAGGCCTGAAGACATGCGTCATAGATCAAGGCTCAGAGGTCCATCAAGCTATGGAGGACAGCGTTCTTCCTATTCTGGGCGTTCTCGGTCTCGTTCAATCTCTAGATCACGTTCTCCTCATCACGTTTCAGGCTCTAGAAACCGTTATCGCTCGAGATCCTACTCACCTGCTCCAAAGCGTCGAAGTGATTATTCTGTCTCCCCAAGAAGCAGACATGGAGATCACCCAAAATCACCTAGAGATTCACGAAAGGAGCGAGGTGATGATCATAATAACAGGTCATATTCTCCAGGTCATGACATTGGTGCAGATCGCAACCGAAGCAGTGGATATAGAGAATTGTCGCCTGGTAGAGTATCGAGGTCACCCTCTGGACCTAGATCAAGATCTGCTGATCCTTCACCTGGACGTGGTAGATGA 792 0.4861 MRGYSPQHYSPPRRGYGNHGRSPPRRGHGGRGRGGRRREQNHGSLLVRNIPLDCRSEELRGPFEKYGQVRDVYIPRDYYTGEPRGFAFVEFVDAYDASEARYHMNGKIFAGREISVVVAAESRKRPEDMRHRSRLRGPSSYGGQRSSYSGRSRSRSISRSRSPHHVSGSRNRYRSRSYSPAPKRRSDYSVSPRSRHGDHPKSPRDSRKERGDDHNNRSYSPGHDIGADRNRSSGYRELSPGRVSRSPSGPRSRSADPSPGRGR* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00817 263 MobiDBLite consensus disorder prediction 139 156 - -
Pte18g00817 263 Gene3D - 9 135 IPR012677 -
Pte18g00817 263 FunFam Serine/arginine-rich SC35-like splicing factor SCL30 isoform A 36 177 - -
Pte18g00817 263 MobiDBLite consensus disorder prediction 157 171 - -
Pte18g00817 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 121 IPR000504 GO:0003723
Pte18g00817 263 SMART rrm1_1 44 117 IPR000504 GO:0003723
Pte18g00817 263 MobiDBLite consensus disorder prediction 19 33 - -
Pte18g00817 263 SUPERFAMILY RNA-binding domain, RBD 40 150 IPR035979 GO:0003676
Pte18g00817 263 MobiDBLite consensus disorder prediction 188 219 - -
Pte18g00817 263 MobiDBLite consensus disorder prediction 1 45 - -
Pte18g00817 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 114 IPR000504 GO:0003723
Pte18g00817 263 MobiDBLite consensus disorder prediction 122 263 - -
Pte18g00817 263 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 38 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00817 Pte-Chr18 20043841 20047426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00817 15 106 Eukaryotic Initiation Factors Gene Family AT3G11400 36.842 1.93e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00817 K12900 - pvy:116117720 276.174