Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00811 ATGTCTTCAACGCCGTCGTATTGGTGCTACACGTGCAATCGTCTCGTGAGGCTGGGGGGTAGCGACACTATTGTTTGTCCAGATTGTGATGGAGAGTTCCTGGAGGAGATCGAGAACCCACCACCATCTTTATATGCTGATGCTCCGCGACGGAGGAGGTTTCCTGAGGCTGCCGCCATGTACATGACAGGCCACCGGTCCAGTTCTGATCAAAACTCGCGTCCTGTTCTCAGGAGGTCTCGCCGGGGTGGACGTGATCCTTCGCCGTTCAATCCGGTTATCGTCCTTCGCGGTTCTCAGGTTGAAGCTGGCCGAAATGGGAATGGGGATGAAGGAGAGGCTCGTAGGTTTGAACTGTATTATGACGATGGTGATGGCTCCGGTCTTAGACCTTTGCCACCGAGTATGTCTGAGTTTCTACTGGGATCTGGGTTTGAGAGGCTTTTGGAACAGCTTTCACAGATTGAAATCAACCGTGTTGGGAGGTTCGAGCATCCACCTGCATCAAAAGCTACTGTCGAATCTATGCCCACTATTGAGATTAAGGAGATTCATATGGAAACACAATCACACTGTGCTGTTTGCAAAGAGCAATTCGAGTTGGGAACTACAGCTCGCGAAATGCCTTGTAATCACATATACCATCAAGATTGCATACTTCCATGGCTTGCGATTCGAAACTCTTGCCCTGTTTGTCGACATGAATTACCTGTGGACATTCAAAACATTGCCGAAAATGGCCAACCTTTGTCCTTGAACGACGAAGATAACGTGGGCTTGACGATTTGGAGGCTACCTGGAGGGGGGTTTGCAGTGGGAAGATTCTCTGGAGGTAGAAGAGGAGCTGAGCGCGAACTTCCTGTTGTGTATACAGAAATGGATGGTGGTTTTAACAATAGTGGTGAGGCAAGGAGAATTTCATGGTCATCGAGAGGAACTACCCGAAGAGAGACTGGTGGTCTTGGAAGAATGCTTCGTAGTTTTTTCACCTGCTTTGGAAGGCCGTTTCAACGTTCAAGCCGTGTGTCCACTTCAGAACCTCGGTTGACTAGGGGAAGTACGCATCATTCTACTCACAATTCAAGTTCGAATTCTACTCCGAACTCTAATTCGTCTTCTAGGAGACGTAGTAGTTTGTCTATGGATGCTAATGGTGGAAATGGGATTTGGTAA 1173 0.4842 MSSTPSYWCYTCNRLVRLGGSDTIVCPDCDGEFLEEIENPPPSLYADAPRRRRFPEAAAMYMTGHRSSSDQNSRPVLRRSRRGGRDPSPFNPVIVLRGSQVEAGRNGNGDEGEARRFELYYDDGDGSGLRPLPPSMSEFLLGSGFERLLEQLSQIEINRVGRFEHPPASKATVESMPTIEIKEIHMETQSHCAVCKEQFELGTTAREMPCNHIYHQDCILPWLAIRNSCPVCRHELPVDIQNIAENGQPLSLNDEDNVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNSGEARRISWSSRGTTRRETGGLGRMLRSFFTCFGRPFQRSSRVSTSEPRLTRGSTHHSTHNSSSNSTPNSNSSSRRRSSLSMDANGGNGIW* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00811 390 MobiDBLite consensus disorder prediction 339 390 - -
Pte18g00811 390 SMART ring_2 192 232 IPR001841 -
Pte18g00811 390 Pfam Ring finger domain 191 233 IPR001841 -
Pte18g00811 390 Pfam Protein of unknown function (DUF1117) 258 362 IPR010543 -
Pte18g00811 390 MobiDBLite consensus disorder prediction 339 384 - -
Pte18g00811 390 FunFam E3 ubiquitin-protein ligase RING1-like 153 239 - -
Pte18g00811 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 239 IPR013083 -
Pte18g00811 390 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Pte18g00811 390 ProSiteProfiles Zinc finger RING-type profile. 192 233 IPR001841 -
Pte18g00811 390 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 88 237 - -
Pte18g00811 390 SUPERFAMILY RING/U-box 172 241 - -
Pte18g00811 390 CDD RING-H2_RNF126-like 192 233 - -
Pte18g00811 390 MobiDBLite consensus disorder prediction 62 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00811 Pte-Chr18 19947046 19948218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00811 131 245 C3H Transcription Factor Family AT5G01980 42.609 5.50e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00811 K11982 - qsa:O6P43_014338 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g00811 18 19947046 19948218 Pte18g00811 18 19947046 19948218 RCT