Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte18g00811 | ATGTCTTCAACGCCGTCGTATTGGTGCTACACGTGCAATCGTCTCGTGAGGCTGGGGGGTAGCGACACTATTGTTTGTCCAGATTGTGATGGAGAGTTCCTGGAGGAGATCGAGAACCCACCACCATCTTTATATGCTGATGCTCCGCGACGGAGGAGGTTTCCTGAGGCTGCCGCCATGTACATGACAGGCCACCGGTCCAGTTCTGATCAAAACTCGCGTCCTGTTCTCAGGAGGTCTCGCCGGGGTGGACGTGATCCTTCGCCGTTCAATCCGGTTATCGTCCTTCGCGGTTCTCAGGTTGAAGCTGGCCGAAATGGGAATGGGGATGAAGGAGAGGCTCGTAGGTTTGAACTGTATTATGACGATGGTGATGGCTCCGGTCTTAGACCTTTGCCACCGAGTATGTCTGAGTTTCTACTGGGATCTGGGTTTGAGAGGCTTTTGGAACAGCTTTCACAGATTGAAATCAACCGTGTTGGGAGGTTCGAGCATCCACCTGCATCAAAAGCTACTGTCGAATCTATGCCCACTATTGAGATTAAGGAGATTCATATGGAAACACAATCACACTGTGCTGTTTGCAAAGAGCAATTCGAGTTGGGAACTACAGCTCGCGAAATGCCTTGTAATCACATATACCATCAAGATTGCATACTTCCATGGCTTGCGATTCGAAACTCTTGCCCTGTTTGTCGACATGAATTACCTGTGGACATTCAAAACATTGCCGAAAATGGCCAACCTTTGTCCTTGAACGACGAAGATAACGTGGGCTTGACGATTTGGAGGCTACCTGGAGGGGGGTTTGCAGTGGGAAGATTCTCTGGAGGTAGAAGAGGAGCTGAGCGCGAACTTCCTGTTGTGTATACAGAAATGGATGGTGGTTTTAACAATAGTGGTGAGGCAAGGAGAATTTCATGGTCATCGAGAGGAACTACCCGAAGAGAGACTGGTGGTCTTGGAAGAATGCTTCGTAGTTTTTTCACCTGCTTTGGAAGGCCGTTTCAACGTTCAAGCCGTGTGTCCACTTCAGAACCTCGGTTGACTAGGGGAAGTACGCATCATTCTACTCACAATTCAAGTTCGAATTCTACTCCGAACTCTAATTCGTCTTCTAGGAGACGTAGTAGTTTGTCTATGGATGCTAATGGTGGAAATGGGATTTGGTAA | 1173 | 0.4842 | MSSTPSYWCYTCNRLVRLGGSDTIVCPDCDGEFLEEIENPPPSLYADAPRRRRFPEAAAMYMTGHRSSSDQNSRPVLRRSRRGGRDPSPFNPVIVLRGSQVEAGRNGNGDEGEARRFELYYDDGDGSGLRPLPPSMSEFLLGSGFERLLEQLSQIEINRVGRFEHPPASKATVESMPTIEIKEIHMETQSHCAVCKEQFELGTTAREMPCNHIYHQDCILPWLAIRNSCPVCRHELPVDIQNIAENGQPLSLNDEDNVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNSGEARRISWSSRGTTRRETGGLGRMLRSFFTCFGRPFQRSSRVSTSEPRLTRGSTHHSTHNSSSNSTPNSNSSSRRRSSLSMDANGGNGIW* | 391 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte18g00811 | 390 | MobiDBLite | consensus disorder prediction | 339 | 390 | - | - | |
Pte18g00811 | 390 | SMART | ring_2 | 192 | 232 | IPR001841 | - | |
Pte18g00811 | 390 | Pfam | Ring finger domain | 191 | 233 | IPR001841 | - | |
Pte18g00811 | 390 | Pfam | Protein of unknown function (DUF1117) | 258 | 362 | IPR010543 | - | |
Pte18g00811 | 390 | MobiDBLite | consensus disorder prediction | 339 | 384 | - | - | |
Pte18g00811 | 390 | FunFam | E3 ubiquitin-protein ligase RING1-like | 153 | 239 | - | - | |
Pte18g00811 | 390 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 156 | 239 | IPR013083 | - | |
Pte18g00811 | 390 | Pfam | zinc-ribbon | 6 | 37 | IPR039525 | GO:0061630 | |
Pte18g00811 | 390 | ProSiteProfiles | Zinc finger RING-type profile. | 192 | 233 | IPR001841 | - | |
Pte18g00811 | 390 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 88 | 237 | - | - | |
Pte18g00811 | 390 | SUPERFAMILY | RING/U-box | 172 | 241 | - | - | |
Pte18g00811 | 390 | CDD | RING-H2_RNF126-like | 192 | 233 | - | - | |
Pte18g00811 | 390 | MobiDBLite | consensus disorder prediction | 62 | 114 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte18g00811 | Pte-Chr18 | 19947046 | 19948218 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte18g00811 | 131 | 245 | C3H Transcription Factor Family | AT5G01980 | 42.609 | 5.50e-26 | 107 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte18g00811 | K11982 | - | qsa:O6P43_014338 | 482.256 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pte18g00811 | 18 | 19947046 | 19948218 | Pte18g00811 | 18 | 19947046 | 19948218 | RCT |