Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00806 ATGGGTTATTGCGGTAGTGGAGGTGGAGGTGGAGTTGGTAATGGAAATCAAAATGGTGGAAGCTATGGAGGTTATGGAGGCAGTGGATGTGACTGTGTGGATATGGTGGAGATGGTGACAATCGATTCTCAAGAGGCAATGGCTTGGCTGCTTGAATTAAGTGAAAGTGCGATGGAAAATATTGCTCAATGTTGGATGTCGATGAAAGAAAAACAAATCTTCAGTTCTCATTGTCCACCAGCAATGTCTAACAGCAACAACTCATGGGAAGAAACGGCTTTTGCCAAAGACATGAGAGCTGGGATTCTTGGAGGGTGCATGTGGCCTCCTAGATTCTACTCCTGTACATTTTGCGAGAGAGAGTTCAAGTCTGCTCAAGCCCTAGGAGGCCACATGAACGTGCATAGAAGGGACAGAGCTCGGCTAAAGCAATATCCTAATAACCCATGCAGCGAAGCCAATGGCAAAGGCAATCATCGCCAACTGGATAGCAATAAGTCCTTGCCAACTCAACCGTCAACAAAAGCTGGTTCACTTGATCATGAACTCTTGAGTACTCCTAATCCCAGTTCTGGCCCTAGTACAACTACATCGCCTAATACCTTTATATCATCAAATGTCAAAGCGTTGTCCACAATGGAACATTTTAAGATTTCTCACTATTCTTCAACGATTCCAAGAGGGCAGTATAACGATGGACTACTTAAACTTTTATTGGCACCAACACTTTCAAAGCCTCAGGAGGTTAAAAGTGCCCCTGAAGACGCTGGTGATTGTGTTCAAACCAATTTGTCAGTCGCCCTAAACTCTTCTGTCGACAAAAAAAGTCCAATTATTGATGAAGCAACCCCTCATAAAAGACACAGGATCTCCTTTTCTTCTCTGCCTGACTTTGTGAGTTCATGTTCCAATGCTGCATATCTTGGTTTGCAAACTCCAGATGTCCTCCTTGGAGTCACGCCAGCTGGAATAGAAGATTTGGATCTTGAACTCAGGCTTGGAGATCCACAGAGGGTGCTGTAG 1023 0.4448 MGYCGSGGGGGVGNGNQNGGSYGGYGGSGCDCVDMVEMVTIDSQEAMAWLLELSESAMENIAQCWMSMKEKQIFSSHCPPAMSNSNNSWEETAFAKDMRAGILGGCMWPPRFYSCTFCEREFKSAQALGGHMNVHRRDRARLKQYPNNPCSEANGKGNHRQLDSNKSLPTQPSTKAGSLDHELLSTPNPSSGPSTTTSPNTFISSNVKALSTMEHFKISHYSSTIPRGQYNDGLLKLLLAPTLSKPQEVKSAPEDAGDCVQTNLSVALNSSVDKKSPIIDEATPHKRHRISFSSLPDFVSSCSNAAYLGLQTPDVLLGVTPAGIEDLDLELRLGDPQRVL* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00806 340 MobiDBLite consensus disorder prediction 147 201 - -
Pte18g00806 340 Pfam C2H2-type zinc finger 113 137 - -
Pte18g00806 340 SMART c2h2final6 113 135 IPR013087 -
Pte18g00806 340 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Pte18g00806 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Pte18g00806 340 Gene3D Classic Zinc Finger 109 168 - -
Pte18g00806 340 PANTHER OS07G0101800 PROTEIN 70 337 - -
Pte18g00806 340 SUPERFAMILY beta-beta-alpha zinc fingers 110 140 IPR036236 -
Pte18g00806 340 MobiDBLite consensus disorder prediction 140 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00806 Pte-Chr18 19833292 19836058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00806 58 339 C2H2 Transcription Factor Family AT5G06070 33.446 1.08e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte18g00806 zf-C2H2_6 9.9e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00806 - - qsa:O6P43_020639 177.178