Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00777 ATGGAGGCCAAGGAGCAAGATGTGAGTGTGGGAGCCAACAAGTTCCCAGAGAGACAGCCAATTGGAATTGCAGCTCAAAGCCAAGATCAGGGCAAGGACTACAAAGAGCCACCACCTGCACCGTTGTTTGAGCCCGGTGAGCTGACCTCATGGTCGTTTTACAGAGCTGGCATTGCTGAGTTCATCGCCACTTTCTTGTTTCTCTACATCACGGTGTTGACTGTCATGGGCTTCTCAAAAGAGCAAAACAAGTGCAAAACGGTTGGTATTCAAGGCATTGCTTGGGCCTTTGGGGGTATGATCTTCGCTCTTGTTTACTGCACCGCCGGTATCTCAGGTGGTCACATCAACCCAGCAGTGACATTCGGTCTATTCCTTGCGAGGAAGCTGTCGTTGACGAGGGCGGTATTCTACATGGTCATGCAGGTTTTGGGTGCCATTTGTGGTGCTGGTGTAGTGAAAGGTTTTGAAGGCAATGCACAATTTGTGCTCAACAAAGGTGGTGCTAATGTTGTCAATCCTGGTTACACCAAGGGTGACGGTCTTGGTGCTGAAATTATTGGCACCTTTGTACTTGTTTACACTGTGTTCTCAGCCACCGATGCCAAGCGTAGCGCCAGAGACTCCCACGTTCCTATTTTGGCTCCATTGCCAATTGGGTTTGCTGTGTTCTTGGTTCACTTGGCCACCATCCCCATCACTGGAACCGGTATTAACCCTGCTAGGAGTCTTGGTGCAGCTATTATCTACAACAGGGACCAAGCCTGGCACGATCATTGGATATTCTGGGTAGGACCATTCATCGGAGCAGCACTTGCAGCTTTATACCACCAAGTCGTGATCAGAGCCATTCCTTTTAAGTCCAGCTGA 870 0.4966 MEAKEQDVSVGANKFPERQPIGIAAQSQDQGKDYKEPPPAPLFEPGELTSWSFYRAGIAEFIATFLFLYITVLTVMGFSKEQNKCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQVLGAICGAGVVKGFEGNAQFVLNKGGANVVNPGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDQAWHDHWIFWVGPFIGAALAALYHQVVIRAIPFKSS* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00777 289 Pfam Major intrinsic protein 47 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte18g00777 289 SUPERFAMILY Aquaporin-like 47 282 IPR023271 -
Pte18g00777 289 ProSitePatterns MIP family signature. 115 123 IPR022357 -
Pte18g00777 289 Gene3D Glycerol uptake facilitator protein. 40 288 IPR023271 -
Pte18g00777 289 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte18g00777 289 PRINTS Major intrinsic protein family signature 220 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte18g00777 289 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte18g00777 289 PRINTS Major intrinsic protein family signature 134 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte18g00777 289 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte18g00777 289 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte18g00777 289 CDD MIP 55 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte18g00777 289 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 285 IPR034294 -
Pte18g00777 289 MobiDBLite consensus disorder prediction 17 39 - -
Pte18g00777 289 FunFam Probable aquaporin PIP1-2 40 289 - -
Pte18g00777 289 NCBIfam MIP family channel protein 59 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00777 Pte-Chr18 19420662 19422623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00777 1 289 Major Intrinsic Protein MIP AT4G23400 85.813 4.61e-172 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00777 K09872 - qsa:O6P43_013892 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g00777 18 19420662 19422623 Pte18g00777 18 19420662 19422623 RCT