Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00762 ATGTCGGCCGATCACACGCAAATACTCCTTTCGGATTCCGATACCGACTCTGAGAACGGCCAATCAGGATCCGGGTTGCTCCGTCATTCAGACCTGTCGAACTCCATCTTCAAATCCTACTTCGATTTTACCGGTCATTCATCGGCAACCTCAATTGACCTCTCGAAGATCCAGGCGTTCCTTACATCTTCGTCTGCTGGTGCTCTATCATGCTTGATATGCCTCGAACGAATCAGACCCGCCGATCCCACTTGGTCTTGTAACTCTCTCTGCTTCGCCGTATTCCACCTCGTATGCATTCAGACCTGGGCACGGCAGGCAACCGACTTGGCTGCCGCGCGCGCCCTCACGCGCCAACCCATCTCTGTTGACGGGTCTGCTGAGAATTCTGTTTGGCATTGCCCAAAGTGTAGGGCCGAGTACTCAAAATCTCAAATTCCGAAAACTTACAAGTGTTTCTGTGGAAAAATCGAGAATCCTCCAAGTGATGACCCATGGGTTTTGCCTCACTCATGCGGTGAAGTCTGTGGTAGGCCGTTGAAGCACAACTGTGGCCACTTTTGTTTGTTGCTCTGCCACCCTGGTCCATGCCCCTCCTGCCCAAAACTTGTCAAAGTTCGATGCTTTTGTGGGTCTGTTGAGGATGTAAAGCGGTGTGGGTTTAAGAATTTTTCGTGTAACAATGTTTGTTCCAAGCGATTGGAATGTAGACTTCATAGGTGCTTGGAGATATGCCACGAGGGGACATGCCCTCCCTGTCGAGCTCGTAGTGTTTACAAGTGCCAATGTGGGAGGAAAGAGGAAGAAAGGGAGTGCTGTGAGCGCCATTTTCAGTGCGATAGTCATTGCGAGAAGATGCTTGCCTGTGGGAAGCATGTATGCCTTAAAGGGTGTCATTCAGGTGAGTGTGGTGATTGTCCATTTCGAGGGAAGAGGACGTGCCCATGTGGGAAGAGAGTGTACGAAGCAATGCCTTGTGATGTGACCGTTCCATTGTGTGGAGGAACTTGTAATAAGCTGATGAACTGTGGTCGGCATAGATGTCCTGAACGATGCCATCGTGGGCCTTGCACTGACGCTTGCAGAATCGTTATCACGAAATACTGCCGGTGTGGAAGTTTGAAGAAAGAGGTTCCATGCTGTCAAGATTTGGCTTGCGACAGGAAGTGCCAGAGAGTAAGAGACTGTGGACGGCATGCTTGCAAGCGTCGCTGCTGTGATGGTGACTGCCCACCTTGCTCAGAGATTTGTGGTAGGAAGCTTCGATGCAAGAACCATAAATGCCCTTCTCCATGTCATAGAGGTGCTTGTGCTCCTTGCCCTGTGATGGTGACAATCTCATGTGCTTGTGGTGAGACGCATTTTGAGGTTCCTTGTGGTACTGAGAGGGACCAAAAGCCTCCTAAATGTTCTAAACGGTGTGGCACTGCTCCTCTTTGCAGACACAGATCGATTCTCAAGCCTCACAGATGTCACTATGGTGCTTGCCCTCCATGTCGACTACCTTGTGATGAAGAGTACCAATGTGGCCACAGGTGCAAATTGAGATGTCATGGTCCTACACCTCCTCCTAATCCAGAATTTACTCTGAAACCTAAGAAGAAAAGATCAATCCCACAGAGTGAATGTACTCCTGGTACACCGTGTCCTCCTTGCCCTGAACTTCTTTGGCGATCTTGTCTTGGCCAGCACTTTGGAGCCGAAAAAATGATGGTTTGCTCGGATAAGTCACAGTTTTCGTGTGACAATTTGTGTGGGAATCTCCTACTTTGTGGAAATCATTACTGTACCAGAGTCTGTCACTCTTTGAAGAGTGAGTTGTCATCAAACAATATAAATAGAGGCGAGCCTTGTGAAGATTGTCATCTTCCTTGTGGAAAGGAAAGGATCCCTAAATGCCAACATACTTGCCCTCAACGCTGCCACCCTGGTGAATGTCCTCCTTGCAAAGTGCTTGTAAAACGATCATGTCATTGTGGCTCAATGGTCCATGTTTTTGAGTGCATATATTACAACAGTTTGTCTGAAAAGGAGCAAATGGCTGTTCGTTCATGTGGAGGGCCATGCCACAGAAAGTTGCCCAACTGTACACATCTATGTCCAGAAACATGTCATCCTGGTCCATGCCCAAGTCCTGAAAAGTGCTGTAAAAAGGTCACTATTAGATGTAAATGCCAAACTTTGAAAAAAGAGTGGTTATGTCACGATGTACAAACAGCATATCACAGTGCAGGGTGTAAGCCTTGTGATGTTTCAAAAAATCAATTTGGGGTGGGAGTTCTTCCCTGCAATTCTGATTGCAAAAGTAAAGTTCAACTGATGGATTCAGAATTGCAGTTGCGTAGGCCAAAGGTCCAGGAGGAAAAAGAGGTAGATGCTGAAAATTCTGTTCCGAAGCGGAGAAAACGACGTCAACGTGTCCAAGAAGAAGTCAGGCGGGGCACAAAGTTGCAGAAATTGGTTTCTACCATAAGGTGGATTCTTCTACTTGTCTTGTTTGCTGTGCTGCTTGTTGCTGCTGCTTACTACGGCTATTATGGTCTCTTGTGGCTAAATGATCGGATGAATGAAGTTGATCAGCAAAGACAAAGAAGATATTCTCGAACCAAATAA 2613 0.4734 MSADHTQILLSDSDTDSENGQSGSGLLRHSDLSNSIFKSYFDFTGHSSATSIDLSKIQAFLTSSSAGALSCLICLERIRPADPTWSCNSLCFAVFHLVCIQTWARQATDLAAARALTRQPISVDGSAENSVWHCPKCRAEYSKSQIPKTYKCFCGKIENPPSDDPWVLPHSCGEVCGRPLKHNCGHFCLLLCHPGPCPSCPKLVKVRCFCGSVEDVKRCGFKNFSCNNVCSKRLECRLHRCLEICHEGTCPPCRARSVYKCQCGRKEEERECCERHFQCDSHCEKMLACGKHVCLKGCHSGECGDCPFRGKRTCPCGKRVYEAMPCDVTVPLCGGTCNKLMNCGRHRCPERCHRGPCTDACRIVITKYCRCGSLKKEVPCCQDLACDRKCQRVRDCGRHACKRRCCDGDCPPCSEICGRKLRCKNHKCPSPCHRGACAPCPVMVTISCACGETHFEVPCGTERDQKPPKCSKRCGTAPLCRHRSILKPHRCHYGACPPCRLPCDEEYQCGHRCKLRCHGPTPPPNPEFTLKPKKKRSIPQSECTPGTPCPPCPELLWRSCLGQHFGAEKMMVCSDKSQFSCDNLCGNLLLCGNHYCTRVCHSLKSELSSNNINRGEPCEDCHLPCGKERIPKCQHTCPQRCHPGECPPCKVLVKRSCHCGSMVHVFECIYYNSLSEKEQMAVRSCGGPCHRKLPNCTHLCPETCHPGPCPSPEKCCKKVTIRCKCQTLKKEWLCHDVQTAYHSAGCKPCDVSKNQFGVGVLPCNSDCKSKVQLMDSELQLRRPKVQEEKEVDAENSVPKRRKRRQRVQEEVRRGTKLQKLVSTIRWILLLVLFAVLLVAAAYYGYYGLLWLNDRMNEVDQQRQRRYSRTK* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00762 870 Pfam NF-X1 type zinc finger 490 500 IPR000967 GO:0005634|GO:0008270
Pte18g00762 870 Pfam NF-X1 type zinc finger 625 650 IPR000967 GO:0005634|GO:0008270
Pte18g00762 870 Pfam NF-X1 type zinc finger 591 602 IPR000967 GO:0005634|GO:0008270
Pte18g00762 870 Pfam NF-X1 type zinc finger 396 414 IPR000967 GO:0005634|GO:0008270
Pte18g00762 870 Pfam NF-X1 type zinc finger 417 441 IPR000967 GO:0005634|GO:0008270
Pte18g00762 870 Pfam NF-X1 type zinc finger 509 518 IPR000967 GO:0005634|GO:0008270
Pte18g00762 870 Pfam NF-X1 type zinc finger 289 307 IPR000967 GO:0005634|GO:0008270
Pte18g00762 870 Pfam NF-X1 type zinc finger 184 201 IPR000967 GO:0005634|GO:0008270
Pte18g00762 870 Pfam NF-X1 type zinc finger 238 254 IPR000967 GO:0005634|GO:0008270
Pte18g00762 870 Pfam NF-X1 type zinc finger 343 362 IPR000967 GO:0005634|GO:0008270
Pte18g00762 870 CDD NF-X1-zinc-finger 226 266 - -
Pte18g00762 870 SMART znfxneu3 509 554 IPR000967 GO:0005634|GO:0008270
Pte18g00762 870 SMART znfxneu3 343 363 IPR000967 GO:0005634|GO:0008270
Pte18g00762 870 SMART znfxneu3 289 308 IPR000967 GO:0005634|GO:0008270
Pte18g00762 870 SMART znfxneu3 396 415 IPR000967 GO:0005634|GO:0008270
Pte18g00762 870 SMART znfxneu3 633 651 IPR000967 GO:0005634|GO:0008270
Pte18g00762 870 SMART znfxneu3 423 442 IPR000967 GO:0005634|GO:0008270
Pte18g00762 870 SMART znfxneu3 236 255 IPR000967 GO:0005634|GO:0008270
Pte18g00762 870 SMART znfxneu3 480 501 IPR000967 GO:0005634|GO:0008270
Pte18g00762 870 SMART znfxneu3 591 623 IPR000967 GO:0005634|GO:0008270
Pte18g00762 870 SMART znfxneu3 696 718 IPR000967 GO:0005634|GO:0008270
Pte18g00762 870 SMART znfxneu3 184 202 IPR000967 GO:0005634|GO:0008270
Pte18g00762 870 CDD NF-X1-zinc-finger 172 220 - -
Pte18g00762 870 MobiDBLite consensus disorder prediction 784 799 - -
Pte18g00762 870 CDD NF-X1-zinc-finger 333 382 - -
Pte18g00762 870 MobiDBLite consensus disorder prediction 784 808 - -
Pte18g00762 870 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 49 518 IPR034078 GO:0003700
Pte18g00762 870 SUPERFAMILY RING/U-box 66 144 - -
Pte18g00762 870 CDD NF-X1-zinc-finger 386 434 - -
Pte18g00762 870 CDD NF-X1-zinc-finger 279 326 - -
Pte18g00762 870 CDD NF-X1-zinc-finger 621 662 - -
Pte18g00762 870 CDD NF-X1-zinc-finger 413 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00762 Pte-Chr18 19259286 19265811 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Pte18g00762 zf-NF-X1 0.0041 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00762 K15683 - mnt:21391067 1434.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g00762 18 19259286 19265811 Pte18g00762 18 19259286 19265811 RCT