Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00754 ATGATCGCTGTAAATTCTCCAAGCAATGAACCAAATGATTCTTCTGGCGATCGTGTTAAGGGTACATGGAGTCCACAAGAAGATGCCACTCTAATGAAGCTGGTTGAGCAACATGGCCCTCGTAATTGGACATGGATCAGCAGTGCGATTCCGGGTCGTTCCGGGAAGTCTTGTCGTCTTCGGTGGTGTAACCAGCTGAGCCCCAATGTGCAGCACCGTCCCTTCACGTCTGCTGAGGACTCCATTATCGTTCAGGCACATAATCTCCACGGTAACAAGTGGGCTACCATTGCACGCCTATTGCCTGGCCGTACTGACAACGCCATCAAAAACCATTGGAATTCCACCCTCCGCCGCCGCAGAGAGGCAGAAGCAGCAGGGCAGTTCTCATCTTTGTCCGCTTCATCCGAGTCCAACTCTACCATGACAGGGTCGAAGCGTGATGTGATTGATCTGGGTGCATCTGAGTCCTACACAGGTTTGAAGCGGCCATATTTAGGACACCCATTTTCACCACTCCGAAATGAAGAGGGAGAAAGAGTAGCTGACCCAGAGACGTCACTGAGTTTATTGCCGCCAGGAGAGAGCGTAACATTGATGCAGAATCAGGGCAGAGAGGAAGATAGGTGTAAAATGGAGATGGACGTGGTGGAGGAGACGTGTCTGATAAACATCATGCACCGTATGATAGCAGAAGAGGTTAAATATTATATTGATAAATTAAGGGCTAAAGGATGTAAGGACACCAGAGATGAGCGAGATCCATGA 768 0.4935 MIAVNSPSNEPNDSSGDRVKGTWSPQEDATLMKLVEQHGPRNWTWISSAIPGRSGKSCRLRWCNQLSPNVQHRPFTSAEDSIIVQAHNLHGNKWATIARLLPGRTDNAIKNHWNSTLRRRREAEAAGQFSSLSASSESNSTMTGSKRDVIDLGASESYTGLKRPYLGHPFSPLRNEEGERVADPETSLSLLPPGESVTLMQNQGREEDRCKMEMDVVEETCLINIMHRMIAEEVKYYIDKLRAKGCKDTRDERDP* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00754 255 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Pte18g00754 255 ProSiteProfiles Myb-like domain profile. 15 66 IPR001005 -
Pte18g00754 255 Gene3D - 19 71 - -
Pte18g00754 255 MobiDBLite consensus disorder prediction 128 146 - -
Pte18g00754 255 Gene3D - 73 147 - -
Pte18g00754 255 CDD SANT 22 64 IPR001005 -
Pte18g00754 255 MobiDBLite consensus disorder prediction 1 24 - -
Pte18g00754 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 66 IPR017930 -
Pte18g00754 255 MobiDBLite consensus disorder prediction 1 21 - -
Pte18g00754 255 PANTHER MYB PROTEIN-RELATED 20 140 - -
Pte18g00754 255 FunFam MYB transcription factor 20 71 - -
Pte18g00754 255 Pfam Myb-like DNA-binding domain 23 81 - -
Pte18g00754 255 CDD SANT 74 117 IPR001005 -
Pte18g00754 255 SMART sant 19 68 IPR001005 -
Pte18g00754 255 SMART sant 71 119 IPR001005 -
Pte18g00754 255 SUPERFAMILY Homeodomain-like 18 113 IPR009057 -
Pte18g00754 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Pte18g00754 255 MobiDBLite consensus disorder prediction 124 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00754 Pte-Chr18 19156676 19157443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00754 17 120 MYB Transcription Factor Family AT5G67300 72.115 2.94e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte18g00754 Myb_DNA-bind_6 2.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00754 - - vvi:100260493 268.085