Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00752 ATGGACGACCACCACTCAGCTCTATCTGCTCCTCACGCTGATCACTATCCCCAAGAAACCAAAACAAAAACCACCGATCTTCCCACCGTCACAACCGATGCTACAGCCACTACCTGTGAAACATCTAATCACTCAACCAGCAGTAGCAACAACGACAGTAATAATGGTACTGGTGGTGACAACAGAAGAAAAGGCAAAGGCAAAGGTGGCCCTGATAATAACAAGTTTAGATACCGAGGCGTTAGACAACGCAGCTGGGGCAAATGGGTGGCTGAGATCCGAGAGCCTCGCAAGCGCAGCCGGAAGTGGCTTGGCACTTTTGCTACTGCAGAAGATGCGGCAAGAGCTTATGACCGTGCTGCTATAATTCTGTACGGAGCTAAAGCTCAACTCAATCTCCAGCCATCCGCTTGCTCGTCTCAGTCTTCTTCTTCACGTGGCTCTTCGTCTTCTTCGTCTTCCTCTACACAAACCCTAAGGCCCTTACTTCCTCGTCCAGCTTGTTTTGGCTTCTCCTTCTCTTCCACCGCTTCTACTCTTCCTGTTCTGAACCAGGCTCCATCTGCATTCATGCCTTGCAGTCTTAACCCTAGTAGTAACTGTGATGTGTGCTCAGCAATTTGCCCTAATATGGTGCAAAATCCACACCAAGTGGTGCAACAGTATAATCAATTCCCAGAATCTGATCAGATTGGTGTTGGTGGGATGAGTGCAGTGTTTGATAATCATTATAGACCAGAACCAACCTCGTACCCAGAGCTTACACATCAAAACGAGTTGCTCCAAAATCAGTCATTTAAAGTTCCAATAGAAGATATGAATTGTTTGATGGGCTCAGCAAGTTCATGCTTGTCTCATTCAACTTCAACACAACCTTTCGTTGCTCCAACTGTTCAGGATCTGTCAAGGGCAGCTGTACCCGGATCACCATCTATGTGGCCAATGATATATGAAGAAGAGTATCCAACCAATTTTTGGGATTATGACGATCCTTTCCTTTTTGATTTCTGA 1011 0.4629 MDDHHSALSAPHADHYPQETKTKTTDLPTVTTDATATTCETSNHSTSSSNNDSNNGTGGDNRRKGKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRSRKWLGTFATAEDAARAYDRAAIILYGAKAQLNLQPSACSSQSSSSRGSSSSSSSSTQTLRPLLPRPACFGFSFSSTASTLPVLNQAPSAFMPCSLNPSSNCDVCSAICPNMVQNPHQVVQQYNQFPESDQIGVGGMSAVFDNHYRPEPTSYPELTHQNELLQNQSFKVPIEDMNCLMGSASSCLSHSTSTQPFVAPTVQDLSRAAVPGSPSMWPMIYEEEYPTNFWDYDDPFLFDF* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00752 336 SUPERFAMILY DNA-binding domain 77 135 IPR016177 GO:0003677
Pte18g00752 336 PRINTS Ethylene responsive element binding protein signature 100 116 IPR001471 GO:0003700|GO:0006355
Pte18g00752 336 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Pte18g00752 336 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 34 265 - -
Pte18g00752 336 SMART rav1_2 77 140 IPR001471 GO:0003700|GO:0006355
Pte18g00752 336 CDD AP2 77 134 IPR001471 GO:0003700|GO:0006355
Pte18g00752 336 Gene3D AP2/ERF domain 76 134 IPR036955 GO:0003700|GO:0006355
Pte18g00752 336 MobiDBLite consensus disorder prediction 59 79 - -
Pte18g00752 336 MobiDBLite consensus disorder prediction 22 58 - -
Pte18g00752 336 Pfam AP2 domain 77 124 IPR001471 GO:0003700|GO:0006355
Pte18g00752 336 MobiDBLite consensus disorder prediction 1 21 - -
Pte18g00752 336 MobiDBLite consensus disorder prediction 137 159 - -
Pte18g00752 336 ProSiteProfiles AP2/ERF domain profile. 77 134 IPR001471 GO:0003700|GO:0006355
Pte18g00752 336 FunFam Ethylene-responsive transcription factor 2 77 135 - -
Pte18g00752 336 MobiDBLite consensus disorder prediction 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00752 Pte-Chr18 19152622 19153632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00752 62 336 AP2-EREBP Transcription Factor Family AT2G40220 44.554 4.43e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte18g00752 AP2 2.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00752 K09286 - jre:108991752 255.373