Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00738 ATGGACTCTGACTTCCCTAATAAAGCTTTAACCAGCACGCGCTTCTCTGAGTTGGAACCGCCGCTCTCGCAACCTATTCTTTACGCTCTCTCCGAATCCGGGTTTGAGTTCTGCACGCCGGTGCAAGCCGGCACCATTCCTTTGCTATGTAACTTCAAGGACGTGGCGGTGGACGCCGCCACCGGTTCAGGCAAAACATTAGCCTTTGTTGTCCCTCTAGTTGAAATTCTTCGAAAGTCCTCTGCTAATCCAAAACCCCAACAGGTTATGGGCATGATAATATCCCCAACAAGGGAGTTAGCATCACAAATTTATCTGGTAGCACAGCCTTTTATTGCAACGTTGCCCGACCTAAAGTCCATGCTTCTGGTTGGTGGAACGGAAGTGAAAGTAGACATGAAGAAAATAGAGGAAGAGGGAGCAAATGTTCTAATTGGTACGCCTGGACGACTGAAAGACATAATGGAACGAAATAAAATGGGGGGCACTTTGGACTTTCGGAACCTTGAGATTTTAGTTCTAGATGAGGCTGATAGACTTCTAGATATGGGATTCCAAGAGCAGATAAATTTCATTATAAATAACTTACCAAAGCAGCGTAGGACAGGTCTTTTTTCTGCAACCCAAACTGAGGCTGTTGAAGAGCTTGCTAGGGCAGGTCTGAGGAATCCGAGGAGGGTTGTAGTAAGAGCAGAGGCAAAATCTTCTAATTATTTAGCATCATCTCAGCAACTTGTATCTTCAAAGACCCCATCTAGCCTTCACATTGAGTACCTGGAATGTGAGGCAGACCAGAAACCATCGCAGCTTCTTGATATCCTTGTTAAGAACCGTTCCAAAAAACTTATAATATATTTCATGACTTGTGCTTGTGTGGATTTCTGGGGAGTGGTTCTTCCTCGCCTTTCAGCCTTGAAGGGGTTCTCATTAATCCCTCTTCATGGAAAGATGAAGCAGACTGTGAGGGAGAAAGCATTAACATCTTTTACCTCTCTTGAAAGTGGAGTTCTGCTATGTACTGACGTTGCTGCACGGGGGCTTGACATTCCAGGCGTTGATTGTGTTATCCAGTACGACCCCCCACAAGATCCAAATGTTTTCATACACAGAGTTGGACGAACTGCTCGGATGGGTAGAACAGGTCATGCTATTGTCTTTCTGTTGCCGAAGGAGGAATCTTATGTTGAATTTCTGAGAAGGAGAGATGTTCCATTACAAGAGAAGAAATGTTCTAATGTTGCACTTGATATCGTTCCTCAGATTCGATCTGCTGCAAAGAAGGACCGTGATGTTATGGAGAAAGGACTCAGGGCATTCGTTTCATATGTTCGTGCATATAAAGAACATCACTGTTCTTATATTTTTAGGTGGAAAGATCTTGAAATTGGTAAGTTGGGCATGGGATATGGTGTATTGCAACTTCCTTCAATGCCAGAGGTGAAACACTATTCACTTTCCACCGAGGGTTTTATACCTGTCAAAGACATCAATTTGGAGGAAATCAAGTACAAGGACAAAAATCGAGAGAAACAGAGACAGAAGAATGTTCAGGCTAGGAAAGAAGCACAAGTGGAAGATCCAAAACCTCGCAAGTCCAGCAAAACCCAAGAAGCAGCCAACGCCATGAAGAAGAAAACAGCCAAACAGAGACGGGCTCAGCAGACAATTGAAGATGCTGACGAGTTAACAAGAGAATACCGTTTGCTTAAAAAACTGAAAAAAGGGGCTATCGATGAAAATGAGTACGCCAAATTGACAGGAACGGAAGAATTACTTTGA 1779 0.4373 MDSDFPNKALTSTRFSELEPPLSQPILYALSESGFEFCTPVQAGTIPLLCNFKDVAVDAATGSGKTLAFVVPLVEILRKSSANPKPQQVMGMIISPTRELASQIYLVAQPFIATLPDLKSMLLVGGTEVKVDMKKIEEEGANVLIGTPGRLKDIMERNKMGGTLDFRNLEILVLDEADRLLDMGFQEQINFIINNLPKQRRTGLFSATQTEAVEELARAGLRNPRRVVVRAEAKSSNYLASSQQLVSSKTPSSLHIEYLECEADQKPSQLLDILVKNRSKKLIIYFMTCACVDFWGVVLPRLSALKGFSLIPLHGKMKQTVREKALTSFTSLESGVLLCTDVAARGLDIPGVDCVIQYDPPQDPNVFIHRVGRTARMGRTGHAIVFLLPKEESYVEFLRRRDVPLQEKKCSNVALDIVPQIRSAAKKDRDVMEKGLRAFVSYVRAYKEHHCSYIFRWKDLEIGKLGMGYGVLQLPSMPEVKHYSLSTEGFIPVKDINLEEIKYKDKNREKQRQKNVQARKEAQVEDPKPRKSSKTQEAANAMKKKTAKQRRAQQTIEDADELTREYRLLKKLKKGAIDENEYAKLTGTEELL* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00738 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 399 IPR027417 -
Pte18g00738 592 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 173 181 IPR000629 -
Pte18g00738 592 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 15 43 IPR014014 GO:0003724
Pte18g00738 592 Pfam DEAD/DEAH box helicase 39 216 IPR011545 GO:0003676|GO:0005524
Pte18g00738 592 SMART helicmild6 296 378 IPR001650 -
Pte18g00738 592 FunFam RNA helicase 9 230 - -
Pte18g00738 592 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 227 IPR014001 -
Pte18g00738 592 Pfam Helicase conserved C-terminal domain 266 378 IPR001650 -
Pte18g00738 592 Gene3D - 256 488 IPR027417 -
Pte18g00738 592 PANTHER RNA HELICASE 12 530 - -
Pte18g00738 592 SMART DUF4217_3 416 479 IPR025313 -
Pte18g00738 592 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 269 425 IPR001650 -
Pte18g00738 592 SMART ultradead3 34 241 IPR014001 -
Pte18g00738 592 CDD DEADc_DDX55 26 228 - -
Pte18g00738 592 MobiDBLite consensus disorder prediction 505 560 - -
Pte18g00738 592 Coils Coil 542 579 - -
Pte18g00738 592 CDD SF2_C_DEAD 257 387 - -
Pte18g00738 592 Gene3D - 3 230 IPR027417 -
Pte18g00738 592 Pfam Domain of unknown function (DUF4217) 419 477 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00738 Pte-Chr18 18865393 18869882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00738 17 414 Eukaryotic Initiation Factors Gene Family AT1G72730 32.581 3.73e-45 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00738 K14809 - vvi:100260487 937.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g00738 18 18865393 18869882 Pte18g00738 18 18865393 18869882 RCT