Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00719 ATGGCATTCGTTGCTTTCTGTGCCATTTCCTTCTTCTCCCTCTTGAACCTATGCCTCCAAGTCACTTTAGCCGACTATGGTGGATGGGATAGTGGCCATGCAACATTTTATGGTGATGGTGATGCATCTGGCACAATGGGGGGTGCTTGTGGATATGGCAACTTAAATAGCCAAGGCTATGGAACTAGCACTGCAGCACTTAGCACTGCTTTATTCAACAATGGCTTGAGCTGCGGGGCTTGCTACGAGATGAGATGTGCCAGTGACCCACAATGGTGCCTTCCTGGAACTCTCATTGTGACTGCCACAAACTTTTGTCCCCCTAACTATGCACTAGCCAACAACAATGGCGGCTGGTGCAATCCTCCTCTTCAACACTTCGATTTGGCTGAGCCAGCATTCTTGCAAATTGCTAAATTCCGAGCTGGAATTGTTCCTGTCTCCTTCAGAAGGGTACCCTGTGTAAAGAAGGGAGGAATCAGATTCACTATTAATGGTCATTCATACTTCAACTTGGTGCTGGTCACAAATGTTGGTGGAGCTGGAGATGTGCACTCTGTTTCAATCAAGGGGTCCCAGACTGGATGGCAACCAATGTCAAGGAACTGGGGACAGAATTGGCAGAGCAATTCTTACCTCAATGGCCAAAGCCTTTCTTTTCAAGTTACCACCAGTGATGGAAGGACTGTTACCAGCTATAACATTGTCCCTGCTAACTGGCAATTTGGACAAACATATGAGGGAGGGCAGTTCTAA 756 0.4722 MAFVAFCAISFFSLLNLCLQVTLADYGGWDSGHATFYGDGDASGTMGGACGYGNLNSQGYGTSTAALSTALFNNGLSCGACYEMRCASDPQWCLPGTLIVTATNFCPPNYALANNNGGWCNPPLQHFDLAEPAFLQIAKFRAGIVPVSFRRVPCVKKGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSIKGSQTGWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTVTSYNIVPANWQFGQTYEGGQF* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00719 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Pte18g00719 251 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Pte18g00719 251 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Pte18g00719 251 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Pte18g00719 251 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Pte18g00719 251 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Pte18g00719 251 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Pte18g00719 251 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Pte18g00719 251 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Pte18g00719 251 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Pte18g00719 251 PANTHER EXPANSIN-A15 14 251 IPR002963 GO:0009664
Pte18g00719 251 SMART dpbb_1 64 149 IPR007112 -
Pte18g00719 251 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Pte18g00719 251 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Pte18g00719 251 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Pte18g00719 251 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Pte18g00719 251 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Pte18g00719 251 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Pte18g00719 251 SUPERFAMILY Barwin-like endoglucanases 28 177 IPR036908 -
Pte18g00719 251 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
Pte18g00719 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Pte18g00719 251 Gene3D - 15 154 IPR036908 -
Pte18g00719 251 FunFam Expansin 20 155 - -
Pte18g00719 251 CDD DPBB_EXPA_N 28 154 - -
Pte18g00719 251 Gene3D - 158 251 IPR036749 -
Pte18g00719 251 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Pte18g00719 251 FunFam Expansin 159 251 - -
Pte18g00719 251 Pfam Lytic transglycolase 64 149 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00719 Pte-Chr18 18606112 18607731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00719 2 252 Expansin Gene Family AT2G40610 77.381 3.59e-144 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00719 - K20628 qsa:O6P43_014839 469.159