LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte18g00689	ATGGTTCAATTCGAGTGTTTAACAATTACTTTGATTCGTCGGCTTATAGGTGGTAGTGCTGAAATTTTCACCTTTAGCTTATCTGGGATAATGGTGAGAGTTAGTGTCCTGAATGATGCTCTCAAGAGCATGTACAATGCTGAGAAACGGGGCAAGCGTCAGGTGTTGATTAGACCATCTTCAAAAGTGATTATCAAGTTTCTTTTGGTGATGCAAAAGCACGGTACATGTACATCCATTCTTTTGTGTAGTTCTCTAGTTTCTTCCTATATGCAACCATATTTGGACAATTTACCTTGTGGTTCTGTACCTTATCTTTCCATTGAAGGTTACATCGGAGAGTTTGAATATGTGGATGATCACCGATCTGGGAAAATTGTTGTCGAATTGAACGGTAGACTTAACAAGTGTGGTGTTATTAGCCCCCGTTTTGATGTTGGTGTCAAAGAAATTGAAGGTTGGACTGCAAGGCTGCTGCCCTCTAGACAGTTTGGATATATTGTCTTGACGACATCTGCTGGAATTATGGATCATGATGAAGCAAGGAGAAAAAATGTTGGTGGAAAAGTTCTGGGTTTTTTTTATTGA	588	0.3946	MVQFECLTITLIRRLIGGSAEIFTFSLSGIMVRVSVLNDALKSMYNAEKRGKRQVLIRPSSKVIIKFLLVMQKHGTCTSILLCSSLVSSYMQPYLDNLPCGSVPYLSIEGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHDEARRKNVGGKVLGFFY*	196

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte18g00689	195	SUPERFAMILY	Ribosomal protein S8	98	195	IPR035987	GO:0003735\|GO:0005840\|GO:0006412
	Pte18g00689	195	PANTHER	40S RIBOSOMAL PROTEIN S15A	31	194	IPR000630	GO:0003735\|GO:0005840\|GO:0006412
	Pte18g00689	195	FunFam	40S ribosomal protein S15a	135	195	-	-
	Pte18g00689	195	SUPERFAMILY	Ribosomal protein S8	34	80	IPR035987	GO:0003735\|GO:0005840\|GO:0006412
	Pte18g00689	195	Gene3D	-	135	195	-	-
	Pte18g00689	195	ProSitePatterns	Ribosomal protein S8 signature.	165	182	IPR000630	GO:0003735\|GO:0005840\|GO:0006412
	Pte18g00689	195	FunFam	40S ribosomal protein S15a	31	83	-	-
	Pte18g00689	195	Pfam	Ribosomal protein S8	106	195	IPR000630	GO:0003735\|GO:0005840\|GO:0006412
	Pte18g00689	195	Gene3D	-	31	134	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte18g00689	Pte-Chr18	17938755	17940629	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte18g00689	31	196	Cytoplasmic Ribosomal Protein Gene Family	AT5G59850	76.506	1.20e-85	247

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte18g00689	K02957		-	cave:132186029	241.506