Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00677 ATGAAAACCATTCTTTCATCAGAGACAATGGACATTCCTGACGGCGTCAGCTTGAAGGTGAGTGCTAAGGTGATCGAGGTTGAAGGTCCACGAGGGAAACTAACTCGTAACTTCAAGCACCTTAACCTTGATTTTGACCTTATTACTGATCCCGAAACTGGTAAGAGAAAGCTCAAGATTGATGCTTGGTTTGGATCTCGCAAGGCATCTGCTGCTATTCGAACTGCTCTCAGCCACGTTGAGAATCTCATCACTGGCGTCACCAAGGGCTATCGCTACAAGATGAGGTTTGTTTATGCTCACTTCCCCATCAATGCTAGCATCACCAACGGTAGCAAGGCCATCGAAATTAGGAACTTTCTTGGCGAGAAGAAGGTAAGAAAAGTGGATATGCTTGAAGGGGTGGCTATCATTCGATCTGAGAAGGTTAAGGATGAGCTCATAGTCGAAGGAAATGACATTGAGCTTGTTTCTCGGTCCTGTGCTCTCATTAACCAGGTGTTTGTCACTATCAGCCCCTCTCTCTCTCTCTCTCTCTCTCTCACTCTCTCACTCTCTCTCACAGACACACACACACGATCGTTTGCCCAAACCCACGGATATATCCTGTTGCACACTTTCTAG 624 0.4631 MKTILSSETMDIPDGVSLKVSAKVIEVEGPRGKLTRNFKHLNLDFDLITDPETGKRKLKIDAWFGSRKASAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKAIEIRNFLGEKKVRKVDMLEGVAIIRSEKVKDELIVEGNDIELVSRSCALINQVFVTISPSLSLSLSLTLSLSLTDTHTRSFAQTHGYILLHTF* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00677 207 FunFam 60S ribosomal protein L9 1 90 - -
Pte18g00677 207 Gene3D - 91 172 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte18g00677 207 FunFam 50S ribosomal protein L6 91 172 - -
Pte18g00677 207 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 168 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte18g00677 207 SUPERFAMILY Ribosomal protein L6 91 167 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte18g00677 207 Gene3D - 1 90 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte18g00677 207 Pfam Ribosomal protein L6 105 167 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte18g00677 207 Pfam Ribosomal protein L6 12 90 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte18g00677 207 SUPERFAMILY Ribosomal protein L6 1 90 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte18g00677 207 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 167 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00677 Pte-Chr18 17750450 17752294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00677 1 166 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 81.928 4.25e-102 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00677 K02940 - qsu:112024691 300.827