Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00656 ATGGCTGTTGCTGAGAATGCTGGGGTTAAAATCGGCTCCTCCAGTCAAAATTTGGACAACAGTGTAGTATCGTCTGACACTACTGGACTTGATGCCGTTGAGAATCCAAAGCCTAGAGCTGATTCCATGAGCAACGGGGTTGACACTATTAACAACGTCGATCAGAACATGGAGGTGTTGCAACATGAAGACAGTGCTCAGACCATTTTTGCAGTGACTAAGATTGCCCAGATGCAAAATGGATTTGACGCCAATGGTGTCCAGAACGAGCAGGTGCCTGTCAAGTCTGATTCCTATGAGATGAATCAAATGCCTAAAGGGGTCGGAAATGGAGCTGATGGAGATGACAATTACAAGCGTGATATTAGGGACTTGGCCGAATTGCTCTCCAAGCTGAATCCCATGGCCGAGGAGTTTGTTCCTACATCCTATACTAAAAATCAAGCCTTTTTTGGAGCTGCTCTTGGAGCCTTTGGCTATACTAACAATTTTCTACTCCAAACTAATTTTGGGAACGCTAATGGACAGACTAATAGAAGGAAGAAGAATGGCTACACTCAGGGGAAGCGAAGGCTCACTCAGAAAATGGATTTAGAGAAGCGAGAAGAGATGATTAGGAGGACAGTCTATGTGTCTGACATTGATCAGCAGGTTACTGAAGAGCAGCTGGCAGCCCTCTTTCTCAGTTGTGGACAGGTCGTTGATTGCCGTATTTGTGGTGATCCGAATTCTATCCTCCACTTTGCATTTATTGAGTTCACTGATGAAGAAGGTGCAAGGGCTGCTTTGAATCTGTCTGGGACTATGCTTGGATATTACCCAGTCCGAGTGCTGCCTTCTAAAACTGCAATTGCCCCTGTTAATCCATCATTCTTACCCAGGTCGGAAGATGAGCGAGAGATGTGTTCAAGAACCATATATTGTACAAATATTGACAAGAAGGTGACTCAAGCTGAAGTTAAACTTTTCTTTGAATCACTTTGTGGGGAGGTTCAACGCTTGAGGCTGCTTGGTGATTATCACCACTCTACTCGCATTGCCTTTGTTGAGTTCACTATGGCTGAAAGTGCAATTGCTGCTCTGAACTGCAGTGGTGTAGTTTTGGGTTCCCTCCCAATAAGGGGTGAGCCCGTCAAAGACACCTGTGAGGTCCCGGGCAACCCGTCCTTCAATGCATTAAGTTATCCCCAACTCATCCCGGAAGTGAATTACTGCTGA 1218 0.4557 MAVAENAGVKIGSSSQNLDNSVVSSDTTGLDAVENPKPRADSMSNGVDTINNVDQNMEVLQHEDSAQTIFAVTKIAQMQNGFDANGVQNEQVPVKSDSYEMNQMPKGVGNGADGDDNYKRDIRDLAELLSKLNPMAEEFVPTSYTKNQAFFGAALGAFGYTNNFLLQTNFGNANGQTNRRKKNGYTQGKRRLTQKMDLEKREEMIRRTVYVSDIDQQVTEEQLAALFLSCGQVVDCRICGDPNSILHFAFIEFTDEEGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPSFLPRSEDEREMCSRTIYCTNIDKKVTQAEVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALNCSGVVLGSLPIRGEPVKDTCEVPGNPSFNALSYPQLIPEVNYC* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00656 405 Gene3D - 167 284 IPR012677 -
Pte18g00656 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 373 IPR000504 GO:0003723
Pte18g00656 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 271 IPR000504 GO:0003723
Pte18g00656 405 Gene3D - 297 374 IPR012677 -
Pte18g00656 405 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 127 372 - -
Pte18g00656 405 SUPERFAMILY RNA-binding domain, RBD 293 382 IPR035979 GO:0003676
Pte18g00656 405 Pfam Ataxin-2 C-terminal region 129 143 IPR009818 -
Pte18g00656 405 FunFam Polyadenylate-binding protein-interacting protein 11 170 284 - -
Pte18g00656 405 SUPERFAMILY RNA-binding domain, RBD 178 283 IPR035979 GO:0003676
Pte18g00656 405 CDD RRM2_CID8_like 300 379 IPR034825 -
Pte18g00656 405 SMART rrm1_1 305 376 IPR000504 GO:0003723
Pte18g00656 405 SMART rrm1_1 208 278 IPR000504 GO:0003723
Pte18g00656 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 282 IPR000504 GO:0003723
Pte18g00656 405 MobiDBLite consensus disorder prediction 1 45 - -
Pte18g00656 405 MobiDBLite consensus disorder prediction 9 31 - -
Pte18g00656 405 CDD RRM1_CID8_like 205 284 IPR034823 -
Pte18g00656 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 379 IPR000504 GO:0003723
Pte18g00656 405 FunFam Polyadenylate-binding protein-interacting protein 10 298 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00656 Pte-Chr18 17487156 17492020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00656 206 368 Eukaryotic Initiation Factors Gene Family AT1G34140 25.150 2.54e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00656 - - qsa:O6P43_014935 574.704