Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte18g00628 | ATGGACTTGGATAGCATTGAGTGTGTGTCATCCTCGGATGGCATGGATGAAGATGAGATCCAACAACATCATACTCTGCATCCTTACCCTCACAATCACTCTGAATTTTCTTCCTCTAAACTACGCAATGGAGGGAATATCACCAATGTTGTGCGCCCAAACTCTAATGCTCCTGCAACAAGTGTCCATGAATTGCTAGAATGCCCTGTGTGTACCAATTCCATGTACCCACCGATCCATCAGTGCCACAATGGGCATACACTGTGTTTAACCTGTAAAATCAGAGTACAGAATAGGTGTCCTACATGTAGACAGGAGCTTGGAGATATTAGGTGTCTTGCACTGGAGAAGGTGGCTGAATCACTTGAGTTACCATGCAAGTATTATTCCTTAGGATGTCCAGAAATATTTCCATATTACAGTAAACTCAAGCATGAGGCAGTCTGCAATTTTAGACCATATAATTGCCCTTATGCTGGATCAGAGTGTTCTGTTGTTGGGGACATCCCTTTTCTTGTTTCACATTTGAGGGACGATCATAAGGTGGACATGCATGCTGGATGCACATTTAACCATCGTTATGTCAAGTCTAATCCTCGTGAAGTAGAGAATGCCACATGGATGCTCACAGTATTCCATTGTTTTGGTCAGTACTTCTGCCTTCATTTTGAAGCCTTCCAGCTAGGATTGGCCCCTGTATATATGGCATTCCTTCGTTTTATGGGTGACGAAAATGAAGCTAGGAATTATAGCTATAGTATTGAGGTTGGGGGCTGCAACAGGAAGCTCATTTGGGAAGGTACACCAAGAAGTATCCGAGATAGCCATCGCAAAGTAAGAGACAGCAATGATGGTCTGATTATCCAGAGAAATATAGCCCTTTTCTTTTCTGGTGGTGATAGGAGTGAACTGAAGCTCAGAATCACTGGGAGAATCTGGAAGGAACAACAGAATCCCGATGGTGGAGTGTGCATACCAAATCTTTGCAGCTGA | 993 | 0.434 | MDLDSIECVSSSDGMDEDEIQQHHTLHPYPHNHSEFSSSKLRNGGNITNVVRPNSNAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCLTCKIRVQNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEAVCNFRPYNCPYAGSECSVVGDIPFLVSHLRDDHKVDMHAGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGLAPVYMAFLRFMGDENEARNYSYSIEVGGCNRKLIWEGTPRSIRDSHRKVRDSNDGLIIQRNIALFFSGGDRSELKLRITGRIWKEQQNPDGGVCIPNLCS* | 331 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte18g00628 | 330 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 11 | 119 | - | - | |
| Pte18g00628 | 330 | SUPERFAMILY | RING/U-box | 52 | 108 | - | - | |
| Pte18g00628 | 330 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 120 | 176 | - | - | |
| Pte18g00628 | 330 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 177 | 309 | - | - | |
| Pte18g00628 | 330 | SUPERFAMILY | TRAF domain-like | 121 | 313 | - | - | |
| Pte18g00628 | 330 | ProSiteProfiles | Zinc finger RING-type profile. | 68 | 104 | IPR001841 | - | |
| Pte18g00628 | 330 | Pfam | Seven in absentia protein family | 110 | 309 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
| Pte18g00628 | 330 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 47 | 315 | - | - | |
| Pte18g00628 | 330 | CDD | RING-HC_SIAHs | 66 | 104 | - | - | |
| Pte18g00628 | 330 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 175 | 309 | IPR008974 | GO:0005515 | |
| Pte18g00628 | 330 | ProSiteProfiles | Zinc finger SIAH-type profile. | 121 | 181 | IPR013010 | GO:0008270 | |
| Pte18g00628 | 330 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 121 | 174 | IPR013083 | - | |
| Pte18g00628 | 330 | CDD | Sina | 182 | 310 | - | - | |
| Pte18g00628 | 330 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 120 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte18g00628 | Pte-Chr18 | 16879868 | 16884314 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte18g00628 | 59 | 316 | C3H Transcription Factor Family | AT2G41980 | 79.845 | 1.24e-160 | 449 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte18g00628 | K04506 | - | qsa:O6P43_015002 | 640.188 |