Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00610 ATGGTCCCCAGCAATGGGGGTAGGGACACCAATACAAGAGCTGCACATGCTGCTCTTCAGAATGTGGTGAGGGGTCATCTTAAAAATTGCATGACCAGCTATGATCAAAACAATCCTGCAAATTTCAGGCATCAAGATGAAGACAGGAACCCAAGGAAGTCAGGGGTTCTTGATCGTTGGCCTACCCGGCTAGTTAACCAAGATGAACAGCAACATGAGGCAGCTGATTCTCCGTATTCATCTGACTCTTCCTTGGCATCATCCTCTGAGTCATGCGCCGCTGATATTTCAACTCTTGCGGCTTCTTCGCTTGTTCAGATATGGGAACAGAGGCTTACCCCATCCAATACCAACAAAATCAGTTCATGTTCATCCTCTACTAGCAGCTCTGGCTCTGGCTTGAGTAATCATGAGACTACATTTAATTGCGCACAAGAAGAAAAGAGAGAATCCGAAGCAGATGATGAAACTGATAAAACTGGACAACCACAACCACAACAGCAAAGTGATCGTGAAATTTCTTCTCAACAATCAAAATCGGCGTTGGCAAACTCAAATGCTGGAGAGCGGTTAAGGGTGGTGGACATAATCAAGAGGTTGTCGGCTGCGAGTGAAGACAATGACCTCGAGCAGTCATGTAGTGACAAGAACGGTTATTCTGTGTTGGAGCACCATGCAGAACACAGAACAATGGTTATAAACTCACCCAGGTTGAGAGGGAGGCAAGCATTTAACGATTTGTTGATGCTGATGGAGCGTGATAGATATGGCGAGCTCCATGCTCTAGCGGAGCGTGCACCGGTTTCGAAGTTCACACAGAGAGGTCGCATTCAGTCTCTGCTTCGCCTGAGGTTACTACAACGTGAAGTAGCTGCTTATGATACACCCTACCTAGAACAAGCAAGAGCTTCTGAGGTGCGCAGGCAGCCACGAGGGTCTAGCAGCATCAGCCACCTAAGGAAGAGATTTAATTATATAGGTAACGAACATGAAACCAAAGTGCAGTCTGAAGCGGATCATAAAAGAAACTCTCCTAGAAAGACGGTGAAAAACACAACTCAATCGAATAATGCTGTGAAAAATGATTGCAGCTTTGAAGACAATCCTTGCCAGGATTTTGCTGACAATGCTGAAGGTAGATTACACATAGGACAGGAGTCAGTGTCCTGCACACGAGGTTTTAATACAAAGGTAGAAACTATTTCAATTTCAGGTAGCATAAGTGTAGAGGCTCAAAAGGCACAAGAAATGGCAGAACCAGTTGAATCTAAGGAAGGTCGCGACGTCTATGCGATAAACCCAGATTTGAAGGCAAGCATTGTAGTAAGCACTGAGGCTAAAACACTTCGCTCTAAAAAATTTTCTGATGAGGCGACTCCATCCATGGGGGATCAGAAGGTAAATAGTACTACAGGGCCAGAGCTAGATGCCGGCGTGGGGATAAGCTTTGTTGAGGTAAGAGACCTTAACTCACAAGAAATAGCCAAGGCAACACTCTCCATGGATGGTTGTGATGATATAAATGTCATGGAGCAAGAGTCAGAGGCAAGCAGCCTACATTATTATGATGAGATGACCGAAGAAATATATGAAAGCTATCCATATGATCAGTATGAAACCAGCTACGACTGGATTGCTGATATTGCTCGCCCTCGAAGTTACTGGGAAAATCTGAGGCAAGAATGGTACAAGGAGATGCTTAGCAGTGGCTCAGATAAAAAGGAGGAAATACGTCAACTCATTGAATCAAGAACTGTATCAACTTTTCTGTCCAGTGACTTCCGAGAAAGAATGGATAAACTGATGGCATGCCACTTGGGAAGACAATCAAATCTAACGGAAAATGAAGAAGACGAGGAAAAAAGTGAATTTGAGTTAATGGCGTTTCTGAGAGAGCATTCGAATCCTGCAGGCTGTCAACAAGGAAGACATGAGATAGAAAATGAAACAGACAAAGCACAGGAGCAACAAGAGGATGTGAGTTTGACAAGTAGCCATTATCATCATCAAGACAATGATGACTTTGTTCAATCCCCATCTTCCACAGAAATTTCTTCTCCATCTCTAACCAGATCGTGGATTTGCAAAGACAATGACACTACTATGGATGATTCTGATAGAGTTGCATCTCCATCGTCACTCTACTACGATAGTCGGCAAAATTCTTCATGCAATAATAACAGTTCAGTTGTAATGGAACTCATTTGCGATTTGAAAGTGCAAATGCAGCAACTTTATCAGGAAATGGCGGACCTGAGGAAATCAATTAAGGGCTGCATTGACATGAAAGTTTCAACGAAGCAGGAAATCCACTCATCAGTACATGCAGCTGCGGCTGGAGAAGGACGAAAGTCATGTGATGGGCTATTGAGGAAAGGAAATTGTTGGGTTTGCCATGAGGTGAAGGCTGACACAGTTTTGTACAGATGTGGGCACATGTGTGCATGCCTAAAGTGTGCCGATGAATTGCAATGGAGTAGTGGGAAGTGTCCAATATGCAGAGCAGTAATTGTGGATGTGGTGCGAGTGTACGTGGATACACAGGGAGAGAATTGA 2556 0.4409 MVPSNGGRDTNTRAAHAALQNVVRGHLKNCMTSYDQNNPANFRHQDEDRNPRKSGVLDRWPTRLVNQDEQQHEAADSPYSSDSSLASSSESCAADISTLAASSLVQIWEQRLTPSNTNKISSCSSSTSSSGSGLSNHETTFNCAQEEKRESEADDETDKTGQPQPQQQSDREISSQQSKSALANSNAGERLRVVDIIKRLSAASEDNDLEQSCSDKNGYSVLEHHAEHRTMVINSPRLRGRQAFNDLLMLMERDRYGELHALAERAPVSKFTQRGRIQSLLRLRLLQREVAAYDTPYLEQARASEVRRQPRGSSSISHLRKRFNYIGNEHETKVQSEADHKRNSPRKTVKNTTQSNNAVKNDCSFEDNPCQDFADNAEGRLHIGQESVSCTRGFNTKVETISISGSISVEAQKAQEMAEPVESKEGRDVYAINPDLKASIVVSTEAKTLRSKKFSDEATPSMGDQKVNSTTGPELDAGVGISFVEVRDLNSQEIAKATLSMDGCDDINVMEQESEASSLHYYDEMTEEIYESYPYDQYETSYDWIADIARPRSYWENLRQEWYKEMLSSGSDKKEEIRQLIESRTVSTFLSSDFRERMDKLMACHLGRQSNLTENEEDEEKSEFELMAFLREHSNPAGCQQGRHEIENETDKAQEQQEDVSLTSSHYHHQDNDDFVQSPSSTEISSPSLTRSWICKDNDTTMDDSDRVASPSSLYYDSRQNSSCNNNSSVVMELICDLKVQMQQLYQEMADLRKSIKGCIDMKVSTKQEIHSSVHAAAAGEGRKSCDGLLRKGNCWVCHEVKADTVLYRCGHMCACLKCADELQWSSGKCPICRAVIVDVVRVYVDTQGEN* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00610 851 MobiDBLite consensus disorder prediction 160 185 - -
Pte18g00610 851 MobiDBLite consensus disorder prediction 116 141 - -
Pte18g00610 851 MobiDBLite consensus disorder prediction 648 689 - -
Pte18g00610 851 MobiDBLite consensus disorder prediction 116 185 - -
Pte18g00610 851 SUPERFAMILY RING/U-box 794 840 - -
Pte18g00610 851 MobiDBLite consensus disorder prediction 142 159 - -
Pte18g00610 851 MobiDBLite consensus disorder prediction 329 346 - -
Pte18g00610 851 MobiDBLite consensus disorder prediction 31 87 - -
Pte18g00610 851 MobiDBLite consensus disorder prediction 348 362 - -
Pte18g00610 851 MobiDBLite consensus disorder prediction 41 56 - -
Pte18g00610 851 MobiDBLite consensus disorder prediction 71 87 - -
Pte18g00610 851 MobiDBLite consensus disorder prediction 648 673 - -
Pte18g00610 851 MobiDBLite consensus disorder prediction 453 472 - -
Pte18g00610 851 Coils Coil 639 659 - -
Pte18g00610 851 PANTHER BNAC05G24000D PROTEIN 8 846 - -
Pte18g00610 851 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 781 850 IPR013083 -
Pte18g00610 851 Coils Coil 134 154 - -
Pte18g00610 851 MobiDBLite consensus disorder prediction 329 362 - -
Pte18g00610 851 MobiDBLite consensus disorder prediction 674 689 - -
Pte18g00610 851 ProSiteProfiles Zinc finger RING-type profile. 795 834 IPR001841 -
Pte18g00610 851 Pfam Zinc finger, C3HC4 type (RING finger) 792 839 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00610 Pte-Chr18 14293430 14296724 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00610 795 850 C3H Transcription Factor Family AT3G06140 37.500 1.07e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00610 - - qsa:O6P43_013357 473.396