LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte18g00575	ATGCCAATGGGCTCCAATTCTGCAGCTGATATGATAGAATCTTCCTCTGCGGTTCATTTTTCTGGATTTCATGTGGATGGTTTGGAGAGAAAAGGTGAAATGGAGGAACCAACTACTTCAGCTACTGGATACATGGCAATGCAACCTTTTGTGATCGGTGTTGCTGGGGGAGCAGCATCTGGTAAAACTACAGTTTGTGATATGATTATTCAGCAGCTTCATGACCAGCGTGTCGTAGTTGTAAATCAGGATTCCTTTTATCGTAATTTGACTGAGGAAGAGCTCACGAGAGTGCATGATTGCAACTTTGACCACCCTGATGCTTTTGACACTGAGCAGTTACTGCGTGTTATGGATAAGTTAAAGCATTCACAAGCTGTAGATATCCCAAATTATGACTCCAAAAGTTACAGAAGTGATGTATTTCCTCCAAGAAGGGTCAATCCTTCAGATGTTATAATTTTGGAAGGCATACTTATTTTCCATGATCCTCGTGTACGAGAGTTGATGAATATGAAGATATTTGTTGATACAGATGCTGATGTTCGATTAGCGAGAAGGATCAGACGTGATACTGGTGAAAAGAAAAGGGGTATTGGCACTGTGCTTGACCAGTACTCAAAATTTGTCAAACCAGCTTTTGATGATTTTATACTTCCAACAAAAAAGTATGCTGATATCATCATCCCCCGTGGAGGAGACAATCATGTGGCCATTGATTTAATTGTACAACATATCCGTACAAAGTTAGGTCAACATGATCTCTGCAAAATATATCCAAATCTGTATGTCATTCAATCGACTTTCCAGATCCGTGGAATGCATACTTTGGTACGTGATTCTCAAACTACTAAGCATGACTTCGTATTTTATGCTGATCGTCTGATTCGGTTGGTTGTTGAGCATGGTCTGGGACATCTGCCATTCACAGAAAAACAAATCATTACACCGACTGACTCTGTCTATACGGGTGTGGATTTCTGTAAGAGGCTGTGTGGTGTCTCAATTATAAGGAGTGGTGAGAGCATGGAGAATGCTTTGCGAGCATGTTGTAAAGGAATCAAGATTGGGAAGATTCTCATTCACAGAGAAGGTGACAATGGACAGCAACTCATCTATGAGAAATTGCCCAATGACATCTCTGATAGGCATGTATTACTGTTGGATCCTATTTTAGGCACAGGTAACTCAGCAGTTCAAGCCATTTCATTGCTGCTAAAGAAGGGTGTCCCAGAGTCTAACATCATATTTCTCAATCTCATATCAGCACCACAAGGTGTGCATATGGTATGCAAAAGATTTCCAAGAATAAAGATAGTGACATCTGAAATTGATTTTGGTTTGAACAATGACTTTCGGGTAGTACCTGGAATGGGTGAATTTGGAGACAGATATTTTGGAACGGATGATGAAGAACAAGTGGTTACCCTTTCACAGTAA	1440	0.4042	MPMGSNSAADMIESSSAVHFSGFHVDGLERKGEMEEPTTSATGYMAMQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVVVNQDSFYRNLTEEELTRVHDCNFDHPDAFDTEQLLRVMDKLKHSQAVDIPNYDSKSYRSDVFPPRRVNPSDVIILEGILIFHDPRVRELMNMKIFVDTDADVRLARRIRRDTGEKKRGIGTVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLVRDSQTTKHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTDSVYTGVDFCKRLCGVSIIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLLKKGVPESNIIFLNLISAPQGVHMVCKRFPRIKIVTSEIDFGLNNDFRVVPGMGEFGDRYFGTDDEEQVVTLSQ*	480

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte18g00575	479	Pfam	Phosphoribulokinase / Uridine kinase family	51	237	IPR006083	GO:0005524\|GO:0016301
	Pte18g00575	479	Gene3D	-	253	468	IPR029057	-
	Pte18g00575	479	FunFam	Uridine kinase	46	252	-	-
	Pte18g00575	479	NCBIfam	uridine kinase	50	249	IPR000764	-
	Pte18g00575	479	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	47	242	IPR027417	-
	Pte18g00575	479	CDD	PRTases_typeI	326	441	IPR000836	-
	Pte18g00575	479	SUPERFAMILY	PRTase-like	252	469	IPR029057	-
	Pte18g00575	479	PANTHER	URIDINE KINASE	38	378	-	-
	Pte18g00575	479	CDD	UMPK	51	249	IPR000764	-
	Pte18g00575	479	PRINTS	Uridine kinase signature	124	139	-	-
	Pte18g00575	479	PRINTS	Uridine kinase signature	49	66	-	-
	Pte18g00575	479	PRINTS	Uridine kinase signature	217	230	-	-
	Pte18g00575	479	PRINTS	Uridine kinase signature	195	206	-	-
	Pte18g00575	479	PRINTS	Uridine kinase signature	181	191	-	-
	Pte18g00575	479	PRINTS	Uridine kinase signature	79	90	-	-
	Pte18g00575	479	Gene3D	-	46	252	IPR027417	-
	Pte18g00575	479	FunFam	Uridine kinase	253	468	-	-
	Pte18g00575	479	Pfam	Uracil phosphoribosyltransferase	267	468	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte18g00575	Pte-Chr18	11981358	11989510	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte18g00575	3	471	PRT Gene Family	AT4G26510	83.510	0.0	804

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte18g00575	K00876		-	qsa:O6P43_021350	852.047